Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44380 245 / 1e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G05975 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020628 [exp] 237 / 9e-81 AT3G44380 170 / 2e-54 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023631 [exp] 55 / 4e-09 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024264 [exp] 50 / 1e-07 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 47 / 1e-06 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 46 / 3e-06 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10017531 [exp] 42 / 9e-05 AT2G46150 98 / 5e-25 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10006764 [exp] 42 / 0.0001 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 40 / 0.0005 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023071 [exp] 39 / 0.0008 AT1G64450 191 / 3e-62 Glycine-rich protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G218400 [exp] 238 / 1e-80 AT3G44380 229 / 1e-77 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 52 / 1e-08 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 49 / 4e-07 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 47 / 1e-06 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G141200 [exp] 41 / 0.0001 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.003G133400 [exp] 40 / 0.0003 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G003800 [exp] 40 / 0.0003 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G208000 [exp] 40 / 0.0003 AT2G01080 241 / 2e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G163800 [exp] 40 / 0.0005 AT2G01080 55 / 6e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10004861 pacid=23157184 polypeptide=Lus10004861 locus=Lus10004861.g ID=Lus10004861.BGIv1.0 annot-version=v1.0 ATGGCGAGCAAAAGCGCTAGGAAATGGAACTGGGTCTCCTTCATCGCCGGAGGAGCCTCCGCGGCGGCGGCTGCCCTCTTAATCCGGGCGAAGCCCAAGG ACCCCACGTTTCACCTAATATCCATCAGCCTCAGCTCCTTCAAGCTCAATTTCCCAGTCCTCGACGCCGAGCTGACCCTCACCGTCCACGTCACGAACCC CAACATCGTCCCCGTCCACTATTCGGCGGCCACGATGTCGATATACTACGACGGGTCGCTGCTCGGGTCGGCGGAGGTGGAGGCCGGGTCGCAGCCGGCG AAGTCTTGCCAGCTGCTGAAGCTGCCGGCTCGGCTTGATGGGCTTGAGCTGGCCCACCACGCGAAGCAGTTTTTAAATGACGTGGCGACGAGGGAGATGG TGCTGGACGCCAGGGTGGACATCGGCGGGAAGGCGAAGATGATGTGGTGGGACCATGGGTTTATTATCCACGTGGAGAGTAAAGTGACCGTTGATCCGTT GTTTTTGGATGTTGTCGAGCAAGAGAATAAGTCGCAGATTGATGTAATGCTTGTTTAG
AA sequence Show only first row Show all	>Lus10004861 pacid=23157184 polypeptide=Lus10004861 locus=Lus10004861.g ID=Lus10004861.BGIv1.0 annot-version=v1.0 MASKSARKWNWVSFIAGGASAAAAALLIRAKPKDPTFHLISISLSSFKLNFPVLDAELTLTVHVTNPNIVPVHYSAATMSIYYDGSLLGSAEVEAGSQPA KSCQLLKLPARLDGLELAHHAKQFLNDVATREMVLDARVDIGGKAKMMWWDHGFIIHVESKVTVDPLFLDVVEQENKSQIDVMLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44380			Late embryogenesis abundant (L...		Lus10004861 [exp]	0	1
AT3G44380			Late embryogenesis abundant (L...		Lus10020628 [exp]	4.0	0.6681

Compare expression of checked genes

Lus10004861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.