Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27450 531 / 0 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 84 / 7e-18 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT5G64370 77 / 2e-15 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1) AT5G22300 61 / 3e-10 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44320 49 / 2e-06 AtNIT3, NIT3 nitrilase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020627 [exp] 594 / 0 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10026464 [exp] 87 / 5e-19 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10030303 [exp] 83 / 6e-18 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10001975 [exp] 81 / 5e-17 AT4G08790 469 / 6e-168 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10020436 [exp] 69 / 6e-13 AT5G64370 669 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10007065 [exp] 69 / 1e-12 AT5G64370 673 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10005201 [exp] 64 / 4e-11 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 59 / 3e-09 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10013313 [exp] 58 / 3e-09 AT5G22300 561 / 0.0 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201400 [exp] 546 / 0 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.009G162600 [exp] 218 / 2e-70 AT2G27450 218 / 3e-71 nitrilase-like protein 1 (.1.2) Potri.010G214600 [exp] 82 / 3e-17 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.006G222900 [exp] 75 / 7e-15 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.007G115900 [exp] 69 / 1e-12 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Potri.016G074200 [exp] 64 / 6e-11 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 59 / 2e-09 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 58 / 2e-09 AT5G22300 578 / 0.0 nitrilase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10004862 pacid=23157161 polypeptide=Lus10004862 locus=Lus10004862.g ID=Lus10004862.BGIv1.0 annot-version=v1.0 ATGGAGAAGGGAAAAAACGGAAGAGAAGTGACGGTCTCAACTCTACAATTCGCTTGTACCGATGATATCTCCACTAATGTCGCCACCGCCGAGAGGTTGG TACGAGCTGCTCACTCGAAGGGTGCAAATATCATTCTTATTCAGGAACTGTTCGAGGGGTACTACTTCTGTCAAGCACAAAGGGAGGACTATATCCAGCG AGCTAAACCTTATAAAGATCACCCTACAATTCTGAGGATGCAGAAACTTGCGAAAGAGCTAGGTGTCGTTATACCAGTGAGCTTCTTTGAAGAGGCCAAC AATGCTCATTACAATTCCATAGCTATAATCGATGCTGATGGGACTGACCTTGGCCTCTACAGAAAGTCTCACATTCCTGATGGACCAGGTTACCAGGAGA AGTTTTACTTCAACCCAGGTGATACCGGCTTCAAGGTCAAGTCTTTGGCCGAATTTAGTGATTTTTTCATGACACTGTTGTTTAAGCTGACTATTGATGA TTTACCGGCTCGTTTTGGTAAACAGGTCTTCCAAACCAAGTTCGCCAAGATTGGAGTAGCTATATGTTGGGATCAGTGGTTTCCTGAGGCAGCCAGAGCA ATGGCTCTTCAAGGTGCTGAAATATTGTTCTACCCTACTGCTATCGGCTCTGAACCTCAAAATGGCGAGCTTGATTCTCGTGATCACTGGAAGCGAGTCA TGCAAGGCCATGCTGGAGCTAATTTGATTCGACGAACTCAGGTACCTTTAGTGGCATCAAACCGAATCGGAAAGGAAATCATAGAGACAGAGCATGGGAA AAGCGAGATAACGTTCTACGGGAACTCGTTTATAGCAGGACCAACTGGAGAAATAGTTGCACTCGCCGATGACAAAGATGAAGCTGTTCTCTTTGCAAAG TTCGATCTCGATAAGATCAAGTCTACCAGACATAGCTGGGGAGTATTCCGAGACCGGCGCCCAGATCTATACAAGGTGCTTCTAACCTTAGATGGTAGTA ACCCATCTCTGTAA
AA sequence Show only first row Show all	>Lus10004862 pacid=23157161 polypeptide=Lus10004862 locus=Lus10004862.g ID=Lus10004862.BGIv1.0 annot-version=v1.0 MEKGKNGREVTVSTLQFACTDDISTNVATAERLVRAAHSKGANIILIQELFEGYYFCQAQREDYIQRAKPYKDHPTILRMQKLAKELGVVIPVSFFEEAN NAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVKSLAEFSDFFMTLLFKLTIDDLPARFGKQVFQTKFAKIGVAICWDQWFPEAARA MALQGAEILFYPTAIGSEPQNGELDSRDHWKRVMQGHAGANLIRRTQVPLVASNRIGKEIIETEHGKSEITFYGNSFIAGPTGEIVALADDKDEAVLFAK FDLDKIKSTRHSWGVFRDRRPDLYKVLLTLDGSNPSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10004862 [exp]	0	1
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10002806 [exp]	2.0	0.9376
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10036661 [exp]	2.4	0.9340
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10027858 [exp]	2.6	0.9380
AT5G47730			Sec14p-like phosphatidylinosit...		Lus10039106 [exp]	4.7	0.9271
AT5G46250			RNA-binding protein (.1.2.3)		Lus10023315 [exp]	7.5	0.9234
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10036370 [exp]	16.2	0.9153
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10014463 [exp]	18.2	0.9303
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10037455 [exp]	19.2	0.9302
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	20.0	0.9340
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10038977 [exp]	20.8	0.9031

Compare expression of checked genes

Lus10004862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.