Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22390 79 / 9e-18 Protein of unknown function (DUF3049) (.1) AT1G54740 61 / 1e-10 Protein of unknown function (DUF3049) (.1) AT5G19260 54 / 1e-08 FAF3 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) AT1G22110 54 / 2e-08 structural constituent of ribosome (.1) AT5G22090 52 / 1e-07 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT3G06020 46 / 7e-06 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020626 [exp] 332 / 6e-116 AT5G22390 96 / 4e-24 Protein of unknown function (DUF3049) (.1) Lus10035353 [exp] 63 / 2e-11 AT1G54740 93 / 1e-21 Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 54 / 2e-08 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10042576 [exp] 53 / 3e-08 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 51 / 1e-07 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 50 / 5e-07 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10022036 [exp] 50 / 6e-07 AT1G03170 92 / 2e-22 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10029969 [exp] 48 / 7e-07 AT1G54740 74 / 4e-16 Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 49 / 1e-06 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162800 [exp] 153 / 2e-45 AT5G22390 74 / 8e-16 Protein of unknown function (DUF3049) (.1) Potri.004G201500 [exp] 124 / 3e-34 AT5G22390 72 / 4e-15 Protein of unknown function (DUF3049) (.1) Potri.001G216000 [exp] 64 / 2e-11 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.005G037600 [exp] 61 / 6e-11 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 61 / 2e-10 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.013G027100 [exp] 60 / 2e-10 AT1G54740 103 / 1e-25 Protein of unknown function (DUF3049) (.1) Potri.010G091800 [exp] 56 / 3e-09 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 55 / 8e-09 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.005G209100 [exp] 53 / 5e-08 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.005G169900 [exp] 51 / 2e-07 AT1G22110 93 / 1e-21 structural constituent of ribosome (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10004863 pacid=23157152 polypeptide=Lus10004863 locus=Lus10004863.g ID=Lus10004863.BGIv1.0 annot-version=v1.0 ATGGCTACCTGTGGAAGCTTCCAACACATTTTCGACAAGCCAAAACCAGAAACACCATCACTCCTCGAGTCCCTTTCGTCCCCGTGGAGCCAACTCAAAC CCACAAAACCTCCTCTTGATCCATCCTCCTTCACCGAGCTATTCGGAGAGCTCCATTTCAAGGAGAGCACTTCCCATGCTTCGCCATCTTCGCTACTTGA TCTTGCAGCAGCCTCAAAGCTGCCAGATTCGTTCTCAGCCAACCTGAAGCCTCATCCATACACTCCTCCATCCGGTATTTCGAAGCTCGGAGACGGCAGC TTGCAGCTGTGCACGGAAGGGCTCGGTTCCGAGAGCTTTGCTGACAATGAGGACATATCTGCAGATTGGAAACATGATGAAGAGAAGAGAAGAACAAAAG GTGCCATCTTTGTAAAGCATTCAGCTTTAAGTAAGGATTTCCGGAGATCAAGGTCGAGTGAAGGGGGTTTCCCTCCTCCGATTTCCTGCATAAGCAAGAC CGGGAAGCCATGGGTTTGCTTCAAGTCTTCCAGGCAGGATGGCAGGTTTGTCCTGACTGAGGTGAAGTTCCCTACACAGGAGTTCCTCCATGCTTGCAGA GAAAACGGGAGGCTCACGCTGAAGTTCGTCCAGCATGACAACGAGATCATCGACGAAGAAGTCGAGGATGAGCAAGAAGGAGAACACGAGCAGCAAGAAG AAAACCATGGTGAAGAAACATGA
AA sequence Show only first row Show all	>Lus10004863 pacid=23157152 polypeptide=Lus10004863 locus=Lus10004863.g ID=Lus10004863.BGIv1.0 annot-version=v1.0 MATCGSFQHIFDKPKPETPSLLESLSSPWSQLKPTKPPLDPSSFTELFGELHFKESTSHASPSSLLDLAAASKLPDSFSANLKPHPYTPPSGISKLGDGS LQLCTEGLGSESFADNEDISADWKHDEEKRRTKGAIFVKHSALSKDFRRSRSSEGGFPPPISCISKTGKPWVCFKSSRQDGRFVLTEVKFPTQEFLHACR ENGRLTLKFVQHDNEIIDEEVEDEQEGEHEQQEENHGEET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	0	1
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	3.5	0.9105
					Lus10033890 [exp]	8.8	0.9101
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	8.9	0.8850
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006306 [exp]	10.7	0.9059
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	11.3	0.8432
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	12.5	0.8941
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	13.2	0.8542
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	13.2	0.9079
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	15.1	0.9075
AT3G52070			unknown protein		Lus10039603 [exp]	16.1	0.8804

Compare expression of checked genes

Lus10004863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.