Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22400 327 / 4e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 253 / 7e-80 rac GTPase activating protein (.1) AT2G46710 222 / 1e-67 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G03100 218 / 3e-66 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT1G08340 211 / 7e-65 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020625 [exp] 602 / 0 AT5G22400 362 / 4e-122 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10022700 [exp] 282 / 2e-90 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 281 / 3e-90 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 240 / 2e-74 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 239 / 9e-74 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10024768 [exp] 216 / 8e-66 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 215 / 4e-65 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162900 [exp] 358 / 4e-120 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 343 / 3e-114 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 309 / 1e-100 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 303 / 1e-98 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G135570 [exp] 228 / 1e-69 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.002G176800 [exp] 226 / 8e-69 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 219 / 4e-66 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0409 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10004864 pacid=23157177 polypeptide=Lus10004864 locus=Lus10004864.g ID=Lus10004864.BGIv1.0 annot-version=v1.0 ATGACCCAACTCCAGCTCCTTCACCAACCTCCTCCCCATTCTTCTTCTTCTCCTTCTTTGGGGGATAACGTCGAACGGGTGGAGGGCGTGGCTGATTGTG GCGGTCAATGTGATTTGTTGTCGTTGAAAGAGAAGGAAAGGGCTAATAATCAGCTTTCCCTTTTGGTGACCCTGATTAGAAAGTCATTGACGGCTTGTAA TAAGAACAGCCATTTGAAGCAGCTCTGTGCGATGGAGATCAGCTGGCCCAGCAATGTCCGCCATGTCGCCCATGTTACCTTTGATAGGTTTAATGGGTTC TTGGGTTTGCCTGTTGAGTTTGAACCTGATGTCCCCAGACGAGCCCCCAGTGCTAGAGTAATTCTGCATAGTTATCATGATCAGTCTGATTTGAAGCAAA CTTCTTGGAGACAAATGCCTGATACAGTAGTTACACTGAAACCTGTGTTGGCAAGATCTAAAGTCACCAACTTCAGGTTCCTTATCCAGCCATCAAGAAA GCTTGATCCTTTCCTGGCTTGGTTTAGGGAACTTCCAACTGGGATTCTGGATTCTCTGCAAACCGAACAAGTCATCCAATCCCAAACTGAAGACGATTGT GCTGAACTTGCGAGGAATCTGCCACCAACTGAATCAGCGCTGTTGGATTGGGCCATCAACTTGATGGCTGACGTTGTTGAACAAGAACACGCAAACAAGA TGAATGCTCGCAACGTAGCCACTGTGTTTGCACCAAACATGACTCAGATGGATGATCCTTTGACAGCACTAATGTATGCAGTCCAGGTGATGAACTTCCT ACAGACCCTCATCAACCGAACACTTCGTGAAAGGCAAGATTCTGTCGTGGATCCAACTCAGGTTTCGCGACTCGAGCCATTTGATGGGAATGGTAACCAG AGCCCTTCACAGTCATGTTCACGCACCAGGGAAGACAACAAGAGAACCGAAGGGTTTAGTAGTGAGGATGAACAACCTGTTACTACACCAGATGAAGATG ATTGCAGTTGCACAACCCAACTCGAAAAGATAACTGGCCAAACCGAACAATCAAGTGAGATTGACAAAACCGATGATCCAAACTCCAAAGGCCAATCAAG CGACTCCAGCCCCAGAAAGATCTCTGGTAAGCAGGAAGTCGTACTTCATTTAACACCACCACAGCAATCTATCCTCCATTTAGCCTCACCGAGCAAGAAG ACTCGAGGAGGAATCAGCAATCTGAGTCGATTAAACTCGAGGACAGAACGCGTCGAAGCTTGGCGATGA
AA sequence Show only first row Show all	>Lus10004864 pacid=23157177 polypeptide=Lus10004864 locus=Lus10004864.g ID=Lus10004864.BGIv1.0 annot-version=v1.0 MTQLQLLHQPPPHSSSSPSLGDNVERVEGVADCGGQCDLLSLKEKERANNQLSLLVTLIRKSLTACNKNSHLKQLCAMEISWPSNVRHVAHVTFDRFNGF LGLPVEFEPDVPRRAPSARVILHSYHDQSDLKQTSWRQMPDTVVTLKPVLARSKVTNFRFLIQPSRKLDPFLAWFRELPTGILDSLQTEQVIQSQTEDDC AELARNLPPTESALLDWAINLMADVVEQEHANKMNARNVATVFAPNMTQMDDPLTALMYAVQVMNFLQTLINRTLRERQDSVVDPTQVSRLEPFDGNGNQ SPSQSCSRTREDNKRTEGFSSEDEQPVTTPDEDDCSCTTQLEKITGQTEQSSEIDKTDDPNSKGQSSDSSPRKISGKQEVVLHLTPPQQSILHLASPSKK TRGGISNLSRLNSRTERVEAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22400			Rho GTPase activating protein ...		Lus10004864 [exp]	0	1
AT3G08490			unknown protein		Lus10029519 [exp]	8.4	0.8980
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10014464 [exp]	8.7	0.8752
AT1G10750			Protein of Unknown Function (D...		Lus10029116 [exp]	13.2	0.7894
AT4G32880	HD	ATHB8, ATHB-8	homeobox gene 8 (.1)		Lus10011616 [exp]	17.8	0.8824
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Lus10023719 [exp]	20.1	0.8315
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022544 [exp]	24.2	0.8350
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Lus10037568 [exp]	25.2	0.8647
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10004230 [exp]	25.3	0.7809
AT5G22400			Rho GTPase activating protein ...		Lus10014213 [exp]	26.8	0.8808
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10022725 [exp]	37.7	0.7934

Compare expression of checked genes

Lus10004864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.