Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27730 99 / 3e-27 copper ion binding (.1) AT5G04750 51 / 1e-08 F1F0-ATPase inhibitor protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020624 [exp] 188 / 4e-62 AT2G27730 108 / 7e-32 copper ion binding (.1) Lus10034146 [exp] 47 / 4e-07 AT5G04750 80 / 8e-21 F1F0-ATPase inhibitor protein, putative (.1.2) Lus10020623 [exp] 44 / 7e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163100 [exp] 124 / 5e-37 AT2G27730 96 / 1e-26 copper ion binding (.1) Potri.004G201700 [exp] 93 / 2e-24 AT2G27730 60 / 1e-12 copper ion binding (.1) Potri.008G016801 [exp] 52 / 4e-09 AT5G04750 56 / 8e-12 F1F0-ATPase inhibitor protein, putative (.1.2) Potri.010G240401 [exp] 49 / 3e-08 AT5G04750 57 / 3e-12 F1F0-ATPase inhibitor protein, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04568 [flax] [poplar] IATP Mitochondrial ATPase inhibitor, IATP
Representative CDS sequence Show only first row Show all	>Lus10004865 pacid=23157187 polypeptide=Lus10004865 locus=Lus10004865.g ID=Lus10004865.BGIv1.0 annot-version=v1.0 ATGGTGAGGATTCCTCCAGCTCTTCTATCTTGCTTTGCTGTTTCAGCGAGCGATTTCTCCATTCTTTCACTCGCTTGTTTGAATTTTTGTACGAGTTTTG CTTTTATGTTTTTGTTCATTTGGCCCCGCTCGGCTGCTTCGTCAGCGAGGAGTGCGAATGAGGCTGATCGCTTCACTATGCTTGGCTTCCGGTGTATAAT GGCAACTAGGATGTCTGCACTGAGGTACATTAGCAAGAGGTTCTCCAGCAGCGGTAAGGTGCTGAGCGAGGAGGAGAAAGCTGCTGAGAACATCTACATC AAGAAAATGGAGCAAGAGAAGCTAGAGAAGCTCGCCCGTAAGGGCCCCAAGCCAGAGGCGGCACCAAGCTCCGGAGCTCCAGTAACCGAAGCCACTCCCT CAGCTTCAGGAGGTTCCACTGCCTCAACTGAGAAGACCTCAACCGACAAGTACCGTAACTACGCAGTAGTGACCGGAGTCGTCACTATTTTCGCCTCTCT CGGGTGGTACCTCAAGGGCGGTTCGAAGAAGCAAGAGGCCCAGGAGTAA
AA sequence Show only first row Show all	>Lus10004865 pacid=23157187 polypeptide=Lus10004865 locus=Lus10004865.g ID=Lus10004865.BGIv1.0 annot-version=v1.0 MVRIPPALLSCFAVSASDFSILSLACLNFCTSFAFMFLFIWPRSAASSARSANEADRFTMLGFRCIMATRMSALRYISKRFSSSGKVLSEEEKAAENIYI KKMEQEKLEKLARKGPKPEAAPSSGAPVTEATPSASGGSTASTEKTSTDKYRNYAVVTGVVTIFASLGWYLKGGSKKQEAQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27730			copper ion binding (.1)		Lus10004865 [exp]	0	1
AT4G16450			unknown protein		Lus10038803 [exp]	4.9	0.7648
AT1G71730			unknown protein		Lus10042772 [exp]	6.7	0.7451
AT5G01650			Tautomerase/MIF superfamily pr...		Lus10022681 [exp]	8.1	0.7645
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	9.2	0.7544
AT5G39600			unknown protein		Lus10033166 [exp]	9.5	0.7421
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10003874 [exp]	10.8	0.7069
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	17.7	0.7178
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10001008 [exp]	18.9	0.7476
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10024687 [exp]	21.0	0.7205
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10004182 [exp]	22.0	0.6979

Compare expression of checked genes

Lus10004865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.