Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27470 121 / 3e-34 CCAAT NF-YB11 "nuclear factor Y, subunit B11", nuclear factor Y, subunit B11 (.1) AT4G14540 54 / 9e-10 CCAAT NF-YB3 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) AT2G38880 54 / 1e-09 CCAAT ATNF-YB1, ATHAP3, HAP3A "nuclear factor Y, subunit B1", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3A, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, NUCLEAR FACTOR Y SUBUNIT B1, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 3, nuclear factor Y, subunit B1 (.1.2.3.4.5.6.7.8) AT5G47640 52 / 1e-08 CCAAT NF-YB2, HAP3b "nuclear factor Y, subunit B2", nuclear factor Y, subunit B2 (.1) AT3G53340 49 / 8e-08 CCAAT NF-YB10 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) AT2G13570 49 / 1e-07 CCAAT NF-YB7 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) AT2G37060 48 / 2e-07 CCAAT NF-YB8 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) AT5G23090 41 / 8e-05 CCAAT NF-YB13 "nuclear factor Y, subunit B13", nuclear factor Y, subunit B13 (.1.2.3.4) AT5G08190 38 / 0.0007 CCAAT NF-YB12 "nuclear factor Y, subunit B12", nuclear factor Y, subunit B12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020621 [exp] 207 / 3e-69 AT2G27470 136 / 3e-40 "nuclear factor Y, subunit B11", nuclear factor Y, subunit B11 (.1) Lus10015058 [exp] 53 / 5e-09 AT2G37060 238 / 4e-81 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001751 [exp] 53 / 9e-09 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10023484 [exp] 52 / 1e-08 AT2G37060 211 / 9e-71 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10001177 [exp] 52 / 1e-08 AT4G14540 225 / 9e-76 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10016616 [exp] 52 / 2e-08 AT4G14540 215 / 5e-72 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10022514 [exp] 52 / 2e-08 AT4G14540 219 / 2e-73 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Lus10023167 [exp] 50 / 3e-08 AT2G37060 172 / 2e-55 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Lus10036574 [exp] 48 / 6e-08 AT2G47810 120 / 1e-36 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G163500 [exp] 150 / 2e-47 AT2G27470 145 / 6e-44 "nuclear factor Y, subunit B11", nuclear factor Y, subunit B11 (.1) Potri.016G006100 [exp] 56 / 7e-10 AT4G14540 212 / 8e-71 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.006G005500 [exp] 54 / 1e-09 AT4G14540 208 / 2e-69 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.001G367500 [exp] 54 / 2e-09 AT4G14540 210 / 2e-70 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.014G167800 [exp] 53 / 6e-09 AT4G14540 221 / 1e-74 "nuclear factor Y, subunit B3", nuclear factor Y, subunit B3 (.1) Potri.008G044800 [exp] 51 / 2e-08 AT2G37060 245 / 3e-84 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.010G216600 [exp] 51 / 2e-08 AT2G37060 236 / 2e-80 "nuclear factor Y, subunit B8", nuclear factor Y, subunit B8 (.1.2.3) Potri.016G085000 [exp] 50 / 3e-08 AT3G53340 247 / 1e-84 "nuclear factor Y, subunit B10", nuclear factor Y, subunit B10 (.1) Potri.005G065300 [exp] 49 / 1e-07 AT2G13570 201 / 2e-65 "nuclear factor Y, subunit B7", nuclear factor Y, subunit B7 (.1) Potri.008G210300 [exp] 47 / 6e-07 AT2G47810 176 / 1e-57 "nuclear factor Y, subunit B5", nuclear factor Y, subunit B5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00808 [flax] [poplar] CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Representative CDS sequence Show only first row Show all	>Lus10004867 pacid=23157189 polypeptide=Lus10004867 locus=Lus10004867.g ID=Lus10004867.BGIv1.0 annot-version=v1.0 ATGGAGAAAGTGGTGCCGGAAGTGGAAGAGCTGCCGAAGGCCATGGTGCGGCGGGTGGTGAAGGAAGCTCTTTCCCAGGTCTCCCCCGACTCCGCCTTCA ATATCCACAAAGGATCGCTTCTTGCCTTCTGCGAGAGCGCTCGGATCTTCATCCACTACCTCTCCGCTACGGCGAATGACATTTGCAAGGAATCAAAGAG GCAGACGATCAATGCAGAGGATGTCTTGAAAGCACTAGAGGAAATCGAGTTCCCAGAGTTTGTTGCCCCTCTCAGATTTTCTCTTGCTGAGTTCAAGAAG AAGAACGCGGGTAAACGAGCAGCTGCATCATCGCAGGCGAGAGAGACCAAGAAGAAGAAGAAAGCCGAGGAAGAAACTCCGTCGAAGAAAGATGGAAACA AAACCAAACAACCTGAAGAGGAAGAGGATGCGGATGATGCTAATGATACTTCTGAAGATGATGGTAACGACGAGTAG
AA sequence Show only first row Show all	>Lus10004867 pacid=23157189 polypeptide=Lus10004867 locus=Lus10004867.g ID=Lus10004867.BGIv1.0 annot-version=v1.0 MEKVVPEVEELPKAMVRRVVKEALSQVSPDSAFNIHKGSLLAFCESARIFIHYLSATANDICKESKRQTINAEDVLKALEEIEFPEFVAPLRFSLAEFKK KNAGKRAAASSQARETKKKKKAEEETPSKKDGNKTKQPEEEEDADDANDTSEDDGNDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Lus10004867 [exp]	0	1
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	1.0	0.9295
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	7.6	0.9115
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	10.2	0.9016
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10004455 [exp]	11.6	0.8668
AT1G20580			Small nuclear ribonucleoprotei...		Lus10013227 [exp]	14.8	0.8593
					Lus10038266 [exp]	15.0	0.8675
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	19.2	0.8968
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10010809 [exp]	20.0	0.8985
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	20.0	0.8475
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10013544 [exp]	22.0	0.8883

Compare expression of checked genes

Lus10004867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.