Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16390 96 / 1e-22 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) AT5G15530 93 / 5e-22 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020619 [exp] 339 / 4e-117 AT5G16390 204 / 9e-65 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092500 [exp] 186 / 3e-57 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Potri.004G119000 [exp] 182 / 8e-56 AT5G15530 173 / 7e-53 biotin carboxyl carrier protein 2 (.1) Potri.019G054400 [exp] 98 / 2e-23 AT5G16390 117 / 5e-31 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Lus10004868 pacid=23157162 polypeptide=Lus10004868 locus=Lus10004868.g ID=Lus10004868.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCCTCCATCTCCGTTCCTTGCCCCAAAACCACCGCTGCTCTCGTCGTTCCTTCCTCGCAACCTCTTGTTCAATCCCGCCATGGACGGCTCT CCTTCCCTCTTGGATCCACATTCTCTGGTCTTCAGTGGCCTAGCAGGAAAGGATCTTCGATCTCGATGGTACGAGCACAGCTGAACGAGGTGGCTGCCAA GGAGTCTGTGAATCATTCAGCTTCGGCGGACTCCTCGAAAACCACCGATGCACAGTTGGACGAGAAAACCGACGCTCCAAAGGGAAGAAGAGTGCCGGAT TCAGCATCACTATCCGAGTTCATGGAACAAGTGTCGGACCTCGTCAAGCTAGTGGATTCGAGAGACATAATGGAACTGAAACTGAAGCAATTGGACTGCG AAATCGAGATCAGGAAAAAAGAGGCTCTTCCCCAGCCACCAACTCCTCCTCCCGTCATGATGATGCAATCTCCTTATCAACAACACGCCATGCCACCACC ACCACCACCACAGGCAGCATCGGCTGCTCCTGCTGCTGCGGCCAAAGCTCCGACTTTGGCCTTGCCTCCTCCTGCAAAGGCTGCCTCGGCTCATCCACCG ATGGGTTGTCCGATGGCTGGCACTTTCTACCGGTGTCCTGCCCCGGGTGAACCCCCTTTCGTGAAGGTTGGAGATAAGGTGCAGAAAGGTCAGGTTGTTT GCATCATTGAAGCCATGAAGCTGATGAACGAAATCGAGGCTGATAAATCAGGAACCATCGTTGAAGTTGTGGCCGAAGATGGTAAACCGGTCACCATTGG CACGGCTGATAAATCAGGACCCATCGTTGAAGTTGTGGCCGAAGATGGTAAACCGGTCACCATTGGCACGTTTCCCAAGGTTAGTGTCTCATCCGTTTTG TCTACTACTATGAATGTGTACTGTCATTTATCCCAAGCAAGTTCCACATAG
AA sequence Show only first row Show all	>Lus10004868 pacid=23157162 polypeptide=Lus10004868 locus=Lus10004868.g ID=Lus10004868.BGIv1.0 annot-version=v1.0 MASSSISVPCPKTTAALVVPSSQPLVQSRHGRLSFPLGSTFSGLQWPSRKGSSISMVRAQLNEVAAKESVNHSASADSSKTTDAQLDEKTDAPKGRRVPD SASLSEFMEQVSDLVKLVDSRDIMELKLKQLDCEIEIRKKEALPQPPTPPPVMMMQSPYQQHAMPPPPPPQAASAAPAAAAKAPTLALPPPAKAASAHPP MGCPMAGTFYRCPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADKSGTIVEVVAEDGKPVTIGTADKSGPIVEVVAEDGKPVTIGTFPKVSVSSVL STTMNVYCHLSQASST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10004868 [exp]	0	1
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10011839 [exp]	2.2	0.9608
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	2.4	0.9683
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	2.8	0.9659
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Lus10011932 [exp]	2.8	0.9546
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10042246 [exp]	3.3	0.9490
AT2G03640			Nuclear transport factor 2 (NT...		Lus10036918 [exp]	4.2	0.9516
AT3G56130			biotin/lipoyl attachment domai...		Lus10040959 [exp]	4.6	0.9632
AT5G60960		PNM1	PPR protein localized to the n...		Lus10034673 [exp]	5.3	0.9612
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	5.3	0.9475
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10042255 [exp]	7.7	0.9554

Compare expression of checked genes

Lus10004868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.