Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27500 491 / 3e-174 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G32860 427 / 1e-148 Glycosyl hydrolase superfamily protein (.1) AT5G42100 387 / 7e-133 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 373 / 1e-127 Glycosyl hydrolase superfamily protein (.1) AT1G30080 363 / 2e-123 Glycosyl hydrolase superfamily protein (.1) AT3G15800 334 / 3e-112 Glycosyl hydrolase superfamily protein (.1) AT2G26600 323 / 2e-108 Glycosyl hydrolase superfamily protein (.1.2) AT4G26830 325 / 4e-108 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 325 / 1e-107 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 320 / 4e-106 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020618 [exp] 716 / 0 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10008277 [exp] 417 / 1e-144 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 411 / 3e-142 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 399 / 2e-138 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 399 / 1e-137 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 363 / 9e-124 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 358 / 3e-122 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 355 / 2e-120 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 342 / 4e-116 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202400 [exp] 517 / 0 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.009G163700 [exp] 507 / 1e-180 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 469 / 2e-165 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G152400 [exp] 440 / 6e-154 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 434 / 2e-151 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.011G084900 [exp] 365 / 2e-124 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 360 / 2e-122 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 346 / 4e-117 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 331 / 1e-110 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 328 / 3e-109 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10004869 pacid=23157190 polypeptide=Lus10004869 locus=Lus10004869.g ID=Lus10004869.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTGTTTCCAGACTTCTCCCCTTGTTGTTCCTGCTGCTTCTTTCAGGGGCAATTCATCGAACAGATGGTGGGGGAGTGGGTATAAACTACG GCCAGATAGCCAACAACCTCCCATCGGTATCCAGAGTCGCGACTCTCCTCCAATCGCTCAACATAAGCAGGGTGAAGCTCTACGATGCTGATCCGAACGT CCTGAAAGCATTCGCCAACACGAATGTCGAGTTCATCATCGGACTAGGAAACGAATTTCTCCAGGAAGTCAAAGATCCAGCCAAAGCTCAGAGCTGGATT GAGCAGCATGTCAAGCCTTACCTTCCACAGACGAAAATCACATCCATCTTAGTTGGAAACGAGGTATTCATGAGTAACAACACTCAGCTCGAGTACAATC TCCTCCCAGCAATGCAGACTGTGTACAAATCTCTGGTTAGCATGGGGCTAGACAAGCAAGTGACTGTCACAACTGCACATTCTCTTAACATATTAGCGAA TTCGTACCCGCCTTCTTCGGGGAGTTTCAGGCCTGATATAGCTGAGTTGATTAAGCCGTTGTTGGATTTCCACGCCCAGACTGATTCACCCTTTCTTATC AATGTGTATCCTTTCTTTGCATACAAAGGTAGCCCTGGTCAGGTGTCCTTGGATTATGCTCTTTTCCAGCCTAACCAAGGGATGACCGATCCGGCCACGA ATTTGAAGTATGACAATATGTTGTATGCTCAGCTTGATGCTGTTTACTCCGCGATGAAGGCGATGGGGCATACTGATATCGAGGTTAGGATTTCGGAGAC TGGCTGGCCTTCGAAAGGTGATTCTGATGAAGCTGGAGCTACGCCACAGAATGCAGGGTTGTATAATGGTAATCTGTTGAAGAGAGTGATGGCTAAAGAA AGCACGCCGGGAAAACCTTCTGTGCCAATCGATGTCCATGTTTTCGCGCTGTTTAACGAGAATTTGAAGCCTGGTCCGGCCTCAGAGAGGAACTATGGTC TCTTCTATCCCGATGGTTCACCAGTTTATAACATTGGCAGGGTCATGCGTGATGGACAGCAACGTAGTTACCTTCCTGACATGACTTATAGCTCTTCATG GAAGATGAATGTGAGTCATCTTCATCTGTGTATTTGCTTAGTACTTCTTTTCAGCAAAATGGTGTTCTGGATTTGGAGCGTTTCTTAA
AA sequence Show only first row Show all	>Lus10004869 pacid=23157190 polypeptide=Lus10004869 locus=Lus10004869.g ID=Lus10004869.BGIv1.0 annot-version=v1.0 MASSVSRLLPLLFLLLLSGAIHRTDGGGVGINYGQIANNLPSVSRVATLLQSLNISRVKLYDADPNVLKAFANTNVEFIIGLGNEFLQEVKDPAKAQSWI EQHVKPYLPQTKITSILVGNEVFMSNNTQLEYNLLPAMQTVYKSLVSMGLDKQVTVTTAHSLNILANSYPPSSGSFRPDIAELIKPLLDFHAQTDSPFLI NVYPFFAYKGSPGQVSLDYALFQPNQGMTDPATNLKYDNMLYAQLDAVYSAMKAMGHTDIEVRISETGWPSKGDSDEAGATPQNAGLYNGNLLKRVMAKE STPGKPSVPIDVHVFALFNENLKPGPASERNYGLFYPDGSPVYNIGRVMRDGQQRSYLPDMTYSSSWKMNVSHLHLCICLVLLFSKMVFWIWSVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Lus10007264 [exp]	1.4	0.8490
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019986 [exp]	3.9	0.8072
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	5.1	0.7757
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10033880 [exp]	5.5	0.7944
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	10.7	0.7706
AT2G27740			Family of unknown function (DU...		Lus10043372 [exp]	11.0	0.7892
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008020 [exp]	11.3	0.7561
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	13.3	0.7837
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	18.1	0.8181
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	18.7	0.7866

Compare expression of checked genes

Lus10004869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.