Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27510 165 / 4e-53 ATFD3 ferredoxin 3 (.1) AT1G60950 140 / 4e-43 FED A, ATFD2, FEDA FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT1G10960 134 / 9e-41 ATFD1 ferredoxin 1 (.1) AT5G10000 122 / 2e-36 ATFD4 ferredoxin 4 (.1) AT4G14890 91 / 7e-24 FdC2 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT1G32550 72 / 2e-16 FdC1 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020616 [exp] 295 / 2e-104 AT2G27510 172 / 9e-56 ferredoxin 3 (.1) Lus10034144 [exp] 169 / 3e-54 AT2G27510 179 / 1e-58 ferredoxin 3 (.1) Lus10043430 [exp] 167 / 8e-54 AT2G27510 179 / 3e-58 ferredoxin 3 (.1) Lus10015462 [exp] 134 / 1e-40 AT1G60950 182 / 8e-60 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10001369 [exp] 131 / 1e-39 AT1G60950 186 / 1e-61 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10006116 [exp] 87 / 2e-22 AT4G14890 186 / 1e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10010557 [exp] 89 / 4e-22 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10000483 [exp] 70 / 2e-15 AT1G32550 245 / 7e-84 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Lus10004576 [exp] 70 / 3e-15 AT1G32550 248 / 6e-85 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202500 [exp] 187 / 1e-61 AT2G27510 164 / 3e-52 ferredoxin 3 (.1) Potri.009G163800 [exp] 184 / 9e-61 AT2G27510 167 / 7e-54 ferredoxin 3 (.1) Potri.008G020100 [exp] 167 / 7e-54 AT2G27510 180 / 5e-59 ferredoxin 3 (.1) Potri.010G239100 [exp] 166 / 2e-53 AT2G27510 175 / 7e-57 ferredoxin 3 (.1) Potri.004G218400 [exp] 141 / 9e-44 AT1G60950 194 / 9e-65 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G015200 [exp] 140 / 3e-43 AT1G60950 176 / 2e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.001G470700 [exp] 134 / 6e-41 AT1G60950 174 / 7e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.010G087300 [exp] 91 / 4e-24 AT4G14890 189 / 7e-63 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.008G153200 [exp] 91 / 7e-24 AT4G14890 193 / 2e-64 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G090400 [exp] 67 / 2e-14 AT1G32550 257 / 3e-88 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10004870 pacid=23157172 polypeptide=Lus10004870 locus=Lus10004870.g ID=Lus10004870.BGIv1.0 annot-version=v1.0 ATGGCAACGGCAGCCGCAACAGTTCTCTCCCAAACCGTTATCACATCCGGGATCGAAAAAAGATTCACGAGCTCAGTTTTCAATCCGGTGAACGCTATTG TGCCAGCGAGGAGCACTGTCTCGAAGCCGTTGGGGTTGAAATTCAGCCGAAGCTTGACAGTGTGCAATGCGGTCTACAAAGTGAAGCTTGTGGGACCGGA CGGTGCAAACACAGAGTTCGAATGTGCGGACGACACCTACATTCTCGACGCGGCAGAGGAGGCGGGAGCGGACCTGCCTTACTCGTGCAGGGCCGGTGCT TGCTGCACCTGTGCCGGGAAACTGGTTTCGGGATCGGTTGACCAGTCGGATGGGTCGTTCTTGGACGAGAATCAGATGAAGGACGGGTATCTCCTCACTT GCGTCTCGTACCCGACTGCGGACTGTGAGATCCACACTCACAAGGAGGAAGAGCTCATGTAA
AA sequence Show only first row Show all	>Lus10004870 pacid=23157172 polypeptide=Lus10004870 locus=Lus10004870.g ID=Lus10004870.BGIv1.0 annot-version=v1.0 MATAAATVLSQTVITSGIEKRFTSSVFNPVNAIVPARSTVSKPLGLKFSRSLTVCNAVYKVKLVGPDGANTEFECADDTYILDAAEEAGADLPYSCRAGA CCTCAGKLVSGSVDQSDGSFLDENQMKDGYLLTCVSYPTADCEIHTHKEEELM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	0	1
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	2.0	0.9763
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	2.2	0.9667
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	3.0	0.9704
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10036098 [exp]	3.5	0.9680
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	3.7	0.9709
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	5.7	0.9619
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	6.5	0.9649
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	6.9	0.9572
AT5G23160			unknown protein		Lus10010194 [exp]	8.0	0.9531
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10023024 [exp]	8.0	0.9366

Compare expression of checked genes

Lus10004870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.