Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08360 0 / 1 Ribosomal protein L1p/L10e family (.1) AT2G27530 0 / 1 PGY1 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) AT5G22440 0 / 1 Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037074 [exp] 301 / 3e-98 AT2G03590 575 / 0.0 ureide permease 1 (.1) Lus10020615 [exp] 0 / 1 AT2G27530 313 / 1e-107 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Lus10026664 [exp] 0 / 1 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004648 [exp] 0 / 1 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036911 [exp] 0 / 1 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G034800 [exp] 203 / 7e-66 AT2G27530 338 / 2e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202832 [exp] 203 / 9e-66 AT2G27530 337 / 7e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.007G035600 [exp] 202 / 2e-65 AT2G27530 339 / 9e-120 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202766 [exp] 196 / 5e-63 AT1G08360 336 / 1e-118 Ribosomal protein L1p/L10e family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10004871 pacid=23157145 polypeptide=Lus10004871 locus=Lus10004871.g ID=Lus10004871.BGIv1.0 annot-version=v1.0 ATGAGTAAGCTGCAGAGTGAGACACTGAGAGAAGCCATCTCAGCCATCAAAGCCGCTGCTAACGAAAAGCCTCGCAAGTTCACCGAGACAGTCGAGTTAC AGATTGGGTTGAAGAACTATGACCCCCAGAAAGACAAGCGTTTCAGCGGCTCAGTTAAGTTGCCTCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCT CGGCGATGCCCAGCACGTCGAAGAGGCGAATGCAATGGGACTGCAATCCATGGATGTGGAAAGCTTGAAGAAGCTGAACAAGAATAAGAAACTGGTTAAG AAGCTAGCAAAGTCTTACCATGCTTTCCTGGCTTCTGAGTCTGTTATCAAGCAGATTCCCCGTCTTCTAGGCCCCGGTCTCAACAAGGCAGGCAAGAAAG TTCCCAACTCTTGTGAGTCATCAGGAATCCCTGGAGTCGAAGGTGAACGAGATCAAGGCAACCGTGAAATTCCAGCTGAAGAAGGTTCTGTGCATGGGAG TTGCAGTAGGAAACCTCGATATGGACGAGAAGCAGATCTTCCAGAATGTGCAAATGAGCATCAACTTCCTTGTTTCCCTACTGAAGAAGAATTGGCAGAA CGTGAAAGTGTTGAACTTGAAGAGTACAATGGGGAAACCACAAAGCATCTTCTGAGAAGGTTTCTGTGGGACAAGATTGGGACTTTTTGGGTTTTGAGTG TAACGGTTAGAGAACTATAG
AA sequence Show only first row Show all	>Lus10004871 pacid=23157145 polypeptide=Lus10004871 locus=Lus10004871.g ID=Lus10004871.BGIv1.0 annot-version=v1.0 MSKLQSETLREAISAIKAAANEKPRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEANAMGLQSMDVESLKKLNKNKKLVK KLAKSYHAFLASESVIKQIPRLLGPGLNKAGKKVPNSCESSGIPGVEGERDQGNREIPAEEGSVHGSCSRKPRYGREADLPECANEHQLPCFPTEEELAE RESVELEEYNGETTKHLLRRFLWDKIGTFWVLSVTVREL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10004871 [exp]	0	1
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10029879 [exp]	2.4	0.8858
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10009578 [exp]	2.6	0.9049
AT4G31985			Ribosomal protein L39 family p...		Lus10019065 [exp]	3.9	0.8434
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Lus10015441 [exp]	8.2	0.8700
AT3G12150			unknown protein		Lus10035501 [exp]	10.4	0.8567
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10020794 [exp]	10.5	0.8720
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10039081 [exp]	14.0	0.8435
AT2G27710			60S acidic ribosomal protein f...		Lus10043377 [exp]	15.5	0.8574
AT3G16080			Zinc-binding ribosomal protein...		Lus10035878 [exp]	15.9	0.8574
AT5G09510			Ribosomal protein S19 family p...		Lus10018777 [exp]	17.7	0.8511

Compare expression of checked genes

Lus10004871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.