Plant FIBer expression Database

Lus10004872 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52740 77 / 6e-19 unknown protein
AT3G44450 62 / 3e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020614
[exp]
137 / 4e-43 AT3G52740 103 / 2e-29 unknown protein
Lus10014197
[exp]
68 / 3e-15 AT3G52740 87 / 2e-22 unknown protein
Lus10017046
[exp]
65 / 5e-14 AT3G52740 94 / 6e-25 unknown protein
Lus10021366
[exp]
64 / 1e-13 AT3G52740 91 / 1e-23 unknown protein
Lus10022717
[exp]
61 / 2e-12 AT3G52740 76 / 3e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G202900
[exp]
83 / 3e-21 AT3G52740 100 / 1e-27 unknown protein
Potri.009G163900
[exp]
80 / 2e-20 AT3G52740 101 / 7e-29 unknown protein
Potri.009G164000
[exp]
80 / 4e-20 AT3G52740 95 / 2e-25 unknown protein
Potri.004G203000
[exp]
79 / 8e-20 AT3G52740 90 / 1e-23 unknown protein
PFAM info
Representative CDS sequence
>Lus10004872 pacid=23157165 polypeptide=Lus10004872 locus=Lus10004872.g ID=Lus10004872.BGIv1.0 annot-version=v1.0
ATGGCGGAATCTCATAACGTCCATCAAGAAATCCCAACTCCACCACCCCGGCGGTTGATTCTACTCTCTCAGAGACCAAACGGGTGGCTGCCGGAGCAGA
GGACGGCGGTGGTGGCGGCGGAGGAGGGGAGGGAGAGGCTGAAGAGGCACAGGGAAGAGGTGGCGGGGAGAGTGGCGATTCCGGAGAACTGGGGGCAGGA
GAATCTGCTGAGTGATTGGGTGGATTGTACTCCGTTCGACACGCTGCTGGCCCCGGCGGGGCTGTCGTCGGCCAGGGCTGCTCTGGTAGCGGAAGCACGG
AGGCGGGGTGTCGGCGTCGGCGGCGGTGGTGGGCAGAGGTTGAGGATTCAGAGTAGATGCTGCTGA
AA sequence
>Lus10004872 pacid=23157165 polypeptide=Lus10004872 locus=Lus10004872.g ID=Lus10004872.BGIv1.0 annot-version=v1.0
MAESHNVHQEIPTPPPRRLILLSQRPNGWLPEQRTAVVAAEEGRERLKRHREEVAGRVAIPENWGQENLLSDWVDCTPFDTLLAPAGLSSARAALVAEAR
RRGVGVGGGGGQRLRIQSRCC

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52740 unknown protein Lus10004872
[exp]
0 1
AT3G08650 ZIP metal ion transporter fami... Lus10035606
[exp]
2.0 0.9710
AT4G26270 PFK3 phosphofructokinase 3 (.1) Lus10011143
[exp]
5.9 0.9465
AT5G39890 Protein of unknown function (D... Lus10003861
[exp]
9.6 0.9525
AT3G17860 ZIM TIFY6B, JAI3, J... JASMONATE-INSENSITIVE 3, jasmo... Lus10031333
[exp]
11.3 0.9469
AT4G26270 PFK3 phosphofructokinase 3 (.1) Lus10043044
[exp]
12.7 0.9474
AT1G75390 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) Lus10041780
[exp]
15.1 0.9384
AT5G59550 zinc finger (C3HC4-type RING f... Lus10040278
[exp]
15.7 0.9319
AT5G43940 PAR2, ATGSNOR1,... PARAQUAT RESISTANT 2, sensitiv... Lus10000496
[exp]
15.8 0.9354
AT1G28120 unknown protein Lus10026630
[exp]
16.6 0.9423
Lus10026740
[exp]
16.8 0.9452

Lus10004872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.