Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08350 576 / 0 Endomembrane protein 70 protein family (.1.2) AT2G01970 555 / 0 Endomembrane protein 70 protein family (.1) AT1G14670 534 / 0 Endomembrane protein 70 protein family (.1) AT5G37310 533 / 0 Endomembrane protein 70 protein family (.1) AT1G10950 307 / 8e-97 AtTMN1 transmembrane nine 1 (.1) AT1G55130 246 / 4e-73 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT3G13772 218 / 1e-62 AtTMN7 transmembrane nine 7 (.1) AT5G10840 211 / 7e-60 Endomembrane protein 70 protein family (.1) AT5G25100 210 / 2e-59 Endomembrane protein 70 protein family (.1.2) AT2G24170 192 / 3e-53 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042286 [exp] 548 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031308 [exp] 548 / 0 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 547 / 0 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 475 / 6e-160 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10001368 [exp] 308 / 9e-97 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10001291 [exp] 305 / 1e-95 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10012697 [exp] 298 / 4e-92 AT1G10950 947 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 256 / 2e-77 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10037643 [exp] 224 / 1e-64 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203200 [exp] 664 / 0 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.004G075450 [exp] 544 / 0 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 541 / 0 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 535 / 0 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 459 / 2e-155 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075525 [exp] 345 / 2e-114 AT5G37310 523 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G015300 [exp] 337 / 5e-108 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.004G218300 [exp] 325 / 1e-103 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.003G038700 [exp] 224 / 8e-65 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.018G106600 [exp] 207 / 1e-58 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10004873 pacid=23157166 polypeptide=Lus10004873 locus=Lus10004873.g ID=Lus10004873.BGIv1.0 annot-version=v1.0 ATGACCCTCCACCACCACATTGCCGCCGTCGCCGTCCTCGCCACTCTAACCTTACTCGCCACCGGATCAGCCGCTCCGTCGCCTTCCGATCGCCGCTACA ATGCAGGAGATTCCGTCCCTTTGTTCGTCAATAAAGTCGGACCCTTTCACAATCCAAGTGAAACGTACCAGTTCTACGAGCTCCCTTTCTGCCGCCCAGA TCGTGTCATCCAAAAGAAGCAAACTTTAGGCGAAGTGTTGAACGGTGATCGGCTAGCAAATGCTCTGTACGAGCTGAAGTTTCTAGAGAAGAAATCTAGG GCGACCTTATGTGAGAAGAAGCTTGAATTAGACGATGTTCTTAGGTTTCGAAGTGCGGTTATCGATGATTACTATTTCCAGATGTACTATGACGATCTTC CATTGTGGGGGTTTGTTGGGAAAGTTGAAGAGCAGAGTTGGCTGCTTGGAGGAGATGATAAGAAGTTGAAGAAGTATTATTTGTTCAAACATGTGATGTT TGATGTGGTCTATAGTGGCGATCGAGTGATCGAGATAAGCGCCATTGGCTATCCAGATGAAGCTGTGGACATAACTGAAGATGTGGAGATTGATGTTGTT GAGTTCACTTACTCGGTCTCGTGGAATGAAACGTCCTCGAATGTGTTGTCTCGGAGTCGGATGGATAGATACACTAGAGCGTCAATGTTTACTGTGCACC GGAAGATCCATTGGTTCTCGTTTGTTAACTCGATTGTTAGTCTGATGCTGTTGATGGGATTGCTCGTTGTGTTCTTCCTTAGACGGCTGAAAAATGATTT GAGAAGGTCATCCAGTGTAGATGAAGAAGAAGATAAAGAAGTTGGTTGGAAGTACATTCATGGTGATGTTTTCCGACATCCACAAAATATGCCGTTGTTT TGTGCTGTCTTAGCCACAGGAGCTCAACTGCTAACCATGGTTTGCCTGCTGTTTGCCTTGGCCTTTGTCGGCGTACTCTATCCTTACAGCCGCGGAGGGT TGTCCACTGCGTGTGTCATGGTTTATGCTCTAACATCTGTAGTTGGGGGATACACTTCTGCTTCCTTCCATTGCAAGTTCGAAGCAACAGGATGGGGAAA AAGTGTCTTCCTCACTGGACTTCTGTACCTCGGTCCTTTATTCACCATAATGTCCTTTCTCAACACAGTTGCGATCTCTTACGGAGCCACAGCAGGGCTC CCGTTTGGCACAATCATGGTCATTGTGCTCATATGCGTTTTCTTGACATTTCCATTGCTTATATTAGGCGGGATTGTCGGATATACTTTCAGGTCCGAAT TTCAAGCACCTTCCCCTCCGAAACGACACCCTAGGGAGATTCCGTATCTGGGATGGTTCAGGAAAGCGCCTTCCCAGATGCTGCTCGCGGGTCTGTTGCC TTCCAGTGCAGTTGTTCTTGAGCTGCATAGTCTCTACACAAGCTTGTGGGGATACAAAATATATACTCTTCCAAGCATTTTGTTCGTCACGTTCGTTATC CTTTGCTTACTTACTGCAATCTTGAGCATTGGGATCACGTACATCCAGCTCTCCGTGGAAGACCACCGATGGTGGTGGAGGTCTGTGGTGCGTGGTGGAT CGCCAGCAATTTTCATGTACCTATACTCGATCTACTTCTTCTCTCGATCGAGCATGATGGGTTTATTGCAGACGTCCTTCTTCTTTGGCTACAGCATCTG CTTCTGCTATGCAGTTTTCTTGATGCTTGGTGCAGTTAGCTTCTTTGCTTCCTTTGTATTCGTTTGCCGGATCTACCGTGCTGTTAAAAACGAGTGA
AA sequence Show only first row Show all	>Lus10004873 pacid=23157166 polypeptide=Lus10004873 locus=Lus10004873.g ID=Lus10004873.BGIv1.0 annot-version=v1.0 MTLHHHIAAVAVLATLTLLATGSAAPSPSDRRYNAGDSVPLFVNKVGPFHNPSETYQFYELPFCRPDRVIQKKQTLGEVLNGDRLANALYELKFLEKKSR ATLCEKKLELDDVLRFRSAVIDDYYFQMYYDDLPLWGFVGKVEEQSWLLGGDDKKLKKYYLFKHVMFDVVYSGDRVIEISAIGYPDEAVDITEDVEIDVV EFTYSVSWNETSSNVLSRSRMDRYTRASMFTVHRKIHWFSFVNSIVSLMLLMGLLVVFFLRRLKNDLRRSSSVDEEEDKEVGWKYIHGDVFRHPQNMPLF CAVLATGAQLLTMVCLLFALAFVGVLYPYSRGGLSTACVMVYALTSVVGGYTSASFHCKFEATGWGKSVFLTGLLYLGPLFTIMSFLNTVAISYGATAGL PFGTIMVIVLICVFLTFPLLILGGIVGYTFRSEFQAPSPPKRHPREIPYLGWFRKAPSQMLLAGLLPSSAVVLELHSLYTSLWGYKIYTLPSILFVTFVI LCLLTAILSIGITYIQLSVEDHRWWWRSVVRGGSPAIFMYLYSIYFFSRSSMMGLLQTSFFFGYSICFCYAVFLMLGAVSFFASFVFVCRIYRAVKNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08350			Endomembrane protein 70 protei...		Lus10004873 [exp]	0	1
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	5.8	0.6994
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	11.1	0.7447
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	14.5	0.7359
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	18.2	0.7421
AT4G32120			Galactosyltransferase family p...		Lus10001920 [exp]	18.6	0.7424
AT5G28350			Quinoprotein amine dehydrogena...		Lus10005119 [exp]	19.4	0.7439
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000715 [exp]	20.7	0.7069
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10036961 [exp]	22.9	0.5884
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	22.9	0.6716
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	25.4	0.7270

Compare expression of checked genes

Lus10004873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.