Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25520 464 / 1e-166 PGY3, ATL5, OLI5, RPL5A RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2) AT5G39740 459 / 1e-164 OLI7, RPL5B OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020612 [exp] 598 / 0 AT3G25520 467 / 1e-167 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2) Lus10043388 [exp] 551 / 0 AT3G25520 471 / 2e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2) Lus10019544 [exp] 550 / 0 AT3G25520 471 / 4e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G099000 [exp] 503 / 0 AT5G39740 461 / 2e-165 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2) Potri.014G197100 [exp] 501 / 0 AT5G39740 471 / 2e-169 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2) Potri.013G128600 [exp] 493 / 6e-178 AT5G39740 422 / 6e-150 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10004874 pacid=23157174 polypeptide=Lus10004874 locus=Lus10004874.g ID=Lus10004874.BGIv1.0 annot-version=v1.0 ATGGCGTTCGCAAAGGCTCAGAAGACCAGAGCTTACTACAAGCGGTTCCAGGTCAAGTACCGCAGACGACGGGATGGGAAGACCGATTACCGTGCCAGGA TCCGCCTCATTAACCAGGACAAGAACAAATACAACACTCCCAAATATCGCTTTGTCGTCCGATTCACGAACAAGGATGTTGTAGCCCAGATCATCCATTC CACCATTGTTGGTGATCATGTGCTCGAGTCAGCTTACTCCCATGAGCTCCGCCACTTTGGTCTTGAGGTTGGACTTACCAACTATGCAGCTGCATACTGC ACTGGACTGCTCCTTGCTCGCAGGGTTCTGAAGAAGCTTGAGATGGATCAGGAGTATGTTGGAAATGTTGAGGCTACTGGTGAAGACTACTCTGTTGAGC CAACAGAAAGGAGGCCATTCCGTGCTCTTCTTGATGTTGGTCTTGTCAGGACCACAACTGGGAACCGTGTCTTCGGTGCCCTCAAGGGAGCTTTGGATGG TGGAATTGACATTCCACACAGTGACAAGAGGTTTGCTGGCTTCAGCAAAGACAGCAAGCAGCTTGATGCTGAGGTTCACCGAAAATATCTCTATGGTGGC CACGTTGCTACTTACATGAGGAGTCTGCAAGAAGATGAGCCTGAGAAGTATCAGGCTCATTTCAGTGAGTATTTGAAGAGGGGCCTGGGACCTGATGAGA TTGAGGCGCTATACAAGAAGGTTCATGCTGCCATCCGTGCTGACCCATCACCGAAGAAATCAGACAAGCCTGTCTCAAATGAGCACAAGAGGCACAACCC GAAGAGGCTAACATACGAGGAACGAAGGGCCAAGTTGATCGAGAGGCTGAATGCGCTCAACTCAGCTGTTGATGATGAGGATGATGACGAGTAG
AA sequence Show only first row Show all	>Lus10004874 pacid=23157174 polypeptide=Lus10004874 locus=Lus10004874.g ID=Lus10004874.BGIv1.0 annot-version=v1.0 MAFAKAQKTRAYYKRFQVKYRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDVVAQIIHSTIVGDHVLESAYSHELRHFGLEVGLTNYAAAYC TGLLLARRVLKKLEMDQEYVGNVEATGEDYSVEPTERRPFRALLDVGLVRTTTGNRVFGALKGALDGGIDIPHSDKRFAGFSKDSKQLDAEVHRKYLYGG HVATYMRSLQEDEPEKYQAHFSEYLKRGLGPDEIEALYKKVHAAIRADPSPKKSDKPVSNEHKRHNPKRLTYEERRAKLIERLNALNSAVDDEDDDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	0	1
AT2G20450			Ribosomal protein L14 (.1)		Lus10021170 [exp]	1.4	0.9686
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	2.4	0.9662
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10035584 [exp]	2.8	0.9658
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	3.2	0.9652
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10003379 [exp]	4.4	0.9515
AT1G67430			Ribosomal protein L22p/L17e fa...		Lus10006421 [exp]	4.5	0.9679
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	5.7	0.9531
AT4G15640			unknown protein		Lus10033970 [exp]	6.1	0.9391
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	6.5	0.9488
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	7.0	0.9617

Compare expression of checked genes

Lus10004874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.