Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67190 582 / 0 F-box/RNI-like superfamily protein (.1.2) AT1G10780 51 / 8e-07 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020611 [exp] 783 / 0 AT1G67190 616 / 0.0 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164200 [exp] 667 / 0 AT1G67190 613 / 0.0 F-box/RNI-like superfamily protein (.1.2) Potri.004G203300 [exp] 653 / 0 AT1G67190 654 / 0.0 F-box/RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004875 pacid=23157183 polypeptide=Lus10004875 locus=Lus10004875.g ID=Lus10004875.BGIv1.0 annot-version=v1.0 ATGGAGAATCTTCCCGTCGAAGTGATTGGGAACATCTTGTCAAGGCTAGGAGGAGCTAGGGATGTGATAATAGCTTCAGCAACATGTCGAAAATGGCGAG AAGCTTACCGCAGCCATCTCCAAACCCTCTCTTTCAACTCCAACGATTGGCCTCTCTACCATGATTTCTCAACCAGTAAGTTACAGATACTGATAACTCA AACCATATTCCAAACCACCGGTCTGCAAGGCTTGTCGATCTTAATGGATGATGTTGTCGAAGAATTCTCTGCCTCAACTGTCATCGCTTGGCTGATGTAC ACTCGGGAGTCACTCCGGAGGCTCTACTACAACGTCCACACCACCCCCGGTGTCAACATTCTCGAGCTTTGTGGTAGACAAAAGCTCGAAACTTTATTCT TGTCCCATAACTCGATCACAGGAGTTGAACCGAATTTCCAGAGATTCCCTTGCTTGAAATCGCTGGCGTTGAGTTACATTACCATTTCGGCTCTGGACCT TAACCTCTTGCTCGCTGCGTGTCCTAAAGTCGAGACGCTGCAGCTTGTGAATCCCGAGATTGCAATGTCGGATGGCCTGGTTACTATCGAGTTGAGCAGT CCTACGTTGAAGAGTGTCTATGTTGAAGCGAGTAGCTTGGATAAGTTCATATTGGAGGCTGATAGTATCGAGTGTTTGCACTTGAAAGATTGTGCCTTTG AGCTGTTCGAGCTGGTTGGTAAAGGGACACTGAAGCATTTCAAGATCGATGATGTTAGTCTTGTCCATCTCGATATCGGCGACACTGTCGAGAATCTTGA AGTCGTTGATGTGAGCAACTTCACGATCATCTGGCCGAAATTCTACCAGATGATTTCCAAGTCGTCGAAACTGAAAAGACTCAGGCTTTGGGATGTGGTC TTTTACGAAGAGGAAGAGATTGTGGATTTGGAGACTATTGCGACTTGCTTTCCGAATCTTAGCCTTTTGTCGATGAGCTATGACTTGAAAGAGACCATGC TTCAGCATGGTTTGCAAGGGGATTCGAAGCTGGAGAATGTGGTTGTGTTGGAACTCGGTTGGAACGTGATTAATGAACTCTTCCCACATTGGGTTGAAGG GTTGCTGAAACGTTGCCCGAATGTGAAGAAGTTGATTCTCCATGGAGTCGTTTCGGATGTCAAGGGCCATGAGGAGTGTCAGATGCTCGCTAACTTCACC TCGTATATGGTCAAGCTCATGAGGAGATATGCTCATATCGATGTGCAGTTTGAGTATGCATAG
AA sequence Show only first row Show all	>Lus10004875 pacid=23157183 polypeptide=Lus10004875 locus=Lus10004875.g ID=Lus10004875.BGIv1.0 annot-version=v1.0 MENLPVEVIGNILSRLGGARDVIIASATCRKWREAYRSHLQTLSFNSNDWPLYHDFSTSKLQILITQTIFQTTGLQGLSILMDDVVEEFSASTVIAWLMY TRESLRRLYYNVHTTPGVNILELCGRQKLETLFLSHNSITGVEPNFQRFPCLKSLALSYITISALDLNLLLAACPKVETLQLVNPEIAMSDGLVTIELSS PTLKSVYVEASSLDKFILEADSIECLHLKDCAFELFELVGKGTLKHFKIDDVSLVHLDIGDTVENLEVVDVSNFTIIWPKFYQMISKSSKLKRLRLWDVV FYEEEEIVDLETIATCFPNLSLLSMSYDLKETMLQHGLQGDSKLENVVVLELGWNVINELFPHWVEGLLKRCPNVKKLILHGVVSDVKGHEECQMLANFT SYMVKLMRRYAHIDVQFEYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67190			F-box/RNI-like superfamily pro...		Lus10004875 [exp]	0	1
AT3G60320			Protein of unknown function (D...		Lus10028207 [exp]	1.4	0.7487
AT5G14390			alpha/beta-Hydrolases superfam...		Lus10022307 [exp]	7.3	0.6094
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	9.3	0.6919
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	17.7	0.6625
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	23.4	0.6650
					Lus10039390 [exp]	24.6	0.6383
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10019191 [exp]	25.1	0.6873
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10016053 [exp]	25.3	0.6056
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	25.5	0.6627
AT1G63430			Leucine-rich repeat protein ki...		Lus10008018 [exp]	26.1	0.6187

Compare expression of checked genes

Lus10004875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.