Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08320 581 / 0 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT3G12250 348 / 3e-117 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 348 / 1e-116 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 336 / 3e-112 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G06839 333 / 1e-109 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT1G68640 330 / 4e-108 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT1G77920 297 / 2e-96 bZIP bZIP transcription factor family protein (.1) AT1G22070 296 / 1e-95 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G10030 290 / 8e-94 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT5G65210 284 / 2e-92 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020610 [exp] 885 / 0 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10019543 [exp] 543 / 0 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10043387 [exp] 513 / 8e-180 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10026166 [exp] 365 / 2e-123 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 363 / 2e-122 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 358 / 1e-120 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10023822 [exp] 343 / 2e-112 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10041475 [exp] 311 / 3e-100 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10009055 [exp] 304 / 7e-99 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164300 [exp] 693 / 0 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.004G203400 [exp] 660 / 0 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G036500 [exp] 369 / 5e-123 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.006G039000 [exp] 364 / 5e-121 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.001G029800 [exp] 363 / 1e-120 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 357 / 3e-118 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 354 / 1e-117 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.016G049200 [exp] 354 / 8e-117 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G058800 [exp] 352 / 1e-115 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.007G085700 [exp] 312 / 4e-102 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10004876 pacid=23157160 polypeptide=Lus10004876 locus=Lus10004876.g ID=Lus10004876.BGIv1.0 annot-version=v1.0 ATGGGAAGCAGTCATAGGATGGGGGAGACTGGTTTATCAGACTCAGGACCTTCAACTACTCATCATCATCTTCCTTATGCTCTGCTCCATGGAATGAACC CTCCTTCTAACTCCACCGCTTTCATGCACCAAGATGGCCCTGCTTTTGATTTTGGGGAGCTGGAGGAGGCAATTGTTCTGCAAGGAGTTAAGATTAGGAA TGAACCAGCAAGATCACAAGTAGAGGTTGGATCATCATCATCAGGTTTGTTTGGAGAAGGAGTAGGGAGGCCAGCTGCCACTACTCTTGAAATGTTCCCT TCTTGGCCAATGAGATTCCACCCACATCAACAACACCAACAACAACATCAACATCAACAACATACTCCCATTGGGAGCTCAAGATCGGGAGGGGAGAGCA CGGATTCAGGATCGGGAGTGAACACGACGATATCCGAAGCTCACCACAACCAACACCAACACCTCCACCAGCCAGAATCACCCATGAGTACTAAGAAAGC AGCATCTTCTTCCTCGGACCATTTCCACCATTTCCAGCAAATGGACATGGTTGCTGCAGCCAGCAATGGAGTAGGAGTAGGACCTTCTTCCTCTTCTCAA CAACAGAACCAGAACCAGTCTTCTGACCACAAACCATCCACCACTGACAAGAGGAAAGGAACATCATCTGAGAAGCCTCTGGATGCTAAGACATTGAGGC GTCTGGCTCAGAACAGAGAAGCTGCGAGAAAGAGTCGGCTCAGGAAAAAGGCATATGTTCAGCAGCTAGAATCTAGCAGAATTAAGCTAGCCCAGATGGA GCAGGAGCTTCAACGAGCTCGTCAACAGGGTTTGTTCATGGGTGGTTGTGGTGGAGCTGGTGCCAATCTTAGCTCTGCCGCTGCGATGTTCGACATGGAG TATGCGCGGTGGCTGGAGGATGATCTCCGGCACATGTCGGAGCTCCGGACGGGTCTCAATGCCCACTTGTCCGATGGCGACCTCCGAGTCGTGGTGGACC GCTACATTTCTCACTACGATGAGATTTTCCGGTTGAAAGGATTGACCGCGAAATCGGACGTTTTCCATCTCATCACCGGAATGTGGACGACTCCCGCTGA GAGGTGCTTTCTTTGGATGGGCGGGTTTAGGCCCTCGGAACTCATCAAGATGTTGATATCGCAATTGGACCCGTTAACGGAGCAACAAGTGATGGGGATA TACAGCCTCCAACATTCATCACAGCAAGCGGAAGACGCAATGTCACAAGGGTTGGAACAGTTGCAACAGTCTCTTGTCGATACGATTGCCGGTGGACCGG TGGTCGACGGGATGCAACAGATGGCCGTGGCCTTGGGGAAGCTTGCCAATCTGGAAGGATTCGTCCGCCAGGCCGATAACTTGCGGCAACAAACACTTCA CCAGCTCCGGCGGATCTTGACCGTCCGGCAGGCGGCTCGTTGCTTTCTGGTGATCGGGGAGTACTACGGGCGGCTACGTGCGTTGAGCTCTTTATGGGCA TCTCGTCCTCGAGACGCAATGTTGGGCGACGAGAACTCGTGCCAAACGACGACGGATTTGCAGATGGTGCAGTCTTCACACTCTCATTTCGCCAACTTTT GA
AA sequence Show only first row Show all	>Lus10004876 pacid=23157160 polypeptide=Lus10004876 locus=Lus10004876.g ID=Lus10004876.BGIv1.0 annot-version=v1.0 MGSSHRMGETGLSDSGPSTTHHHLPYALLHGMNPPSNSTAFMHQDGPAFDFGELEEAIVLQGVKIRNEPARSQVEVGSSSSGLFGEGVGRPAATTLEMFP SWPMRFHPHQQHQQQHQHQQHTPIGSSRSGGESTDSGSGVNTTISEAHHNQHQHLHQPESPMSTKKAASSSSDHFHHFQQMDMVAAASNGVGVGPSSSSQ QQNQNQSSDHKPSTTDKRKGTSSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLAQMEQELQRARQQGLFMGGCGGAGANLSSAAAMFDME YARWLEDDLRHMSELRTGLNAHLSDGDLRVVVDRYISHYDEIFRLKGLTAKSDVFHLITGMWTTPAERCFLWMGGFRPSELIKMLISQLDPLTEQQVMGI YSLQHSSQQAEDAMSQGLEQLQQSLVDTIAGGPVVDGMQQMAVALGKLANLEGFVRQADNLRQQTLHQLRRILTVRQAARCFLVIGEYYGRLRALSSLWA SRPRDAMLGDENSCQTTTDLQMVQSSHSHFANF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	0	1
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10011569 [exp]	1.0	0.9653
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10012059 [exp]	1.7	0.9404
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	2.0	0.9442
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	4.6	0.9312
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	5.5	0.9341
					Lus10025897 [exp]	5.5	0.9249
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	5.6	0.9136
AT5G19970			unknown protein		Lus10019451 [exp]	8.5	0.9291
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	9.9	0.9130
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	10.2	0.9211

Compare expression of checked genes

Lus10004876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.