Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22450 870 / 0 unknown protein AT2G19390 276 / 3e-76 unknown protein AT4G29790 200 / 4e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020607 [exp] 2252 / 0 AT5G22450 916 / 0.0 unknown protein Lus10000530 [exp] 122 / 2e-31 AT5G22450 71 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203500 [exp] 1340 / 0 AT5G22450 958 / 0.0 unknown protein Potri.009G164400 [exp] 1273 / 0 AT5G22450 952 / 0.0 unknown protein Potri.010G238400 [exp] 716 / 0 AT5G22450 513 / 8e-161 unknown protein Potri.008G020600 [exp] 700 / 0 AT5G22450 543 / 2e-172 unknown protein Potri.018G056400 [exp] 280 / 2e-77 AT2G19390 1022 / 0.0 unknown protein Potri.006G146600 [exp] 216 / 5e-57 AT2G19390 1068 / 0.0 unknown protein Potri.006G146700 [exp] 67 / 3e-12 AT4G29790 203 / 2e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004878 pacid=23157186 polypeptide=Lus10004878 locus=Lus10004878.g ID=Lus10004878.BGIv1.0 annot-version=v1.0 ATGTTTGGCTCGGGGAGCAGTTTGAGTCGGGGCAATGCCACGTCACCGTTGGATATGCCACCTTTGACGGAGTGCTTACCTTTGGAGCCGATCACGTTAG GTGGCCACAAATTCACTCGTTCTGGAGAAATAAGGCGGGCTTTGGGTTTCGGAAGTGCTTCTGAGGACCATTCGTTTGGACTTGCTCATCCAAAACCTTC CCCTGCTGTGGCAACGGAGGAGCTAAAGGTGTTTAAAGAAAGCGTGCAGGATACTAATAGAAAGGCCAGGGATAGATCAAAGCTGCTGAAGGACTCGATA ATCAAATTGGAAAAGTATAGGGAAGTATTAACCTCCAAGAAGCGTCAGAGAAGTGATTTTTCTGTGGGTGAGAGACCGAATGGATCAAGTTTAGCAAAAA TGGGGAGTCAGATCCACCGAAGCCCTCATGATGGTATGCCACAAAGACTGGAGGATCGGGCCAAAAGTATTGGTCTAAATAAGCGTGTTCGTACGTCGGT GGCTGATGTGAGGGCAGACATACGGAGCAGCCCTAGCCCAAGGCAGCAGATGGTAATGGAAAAGGGTGCAGATGTGCTTCCAGATATTGGCGGGGGTGGG GCTCGTTTTGAAGAAAAGATTCGCAGATTGCCTGCAGGAGGTGAAGGATGGGATACCAAGAATAAAAAGAAGCGTTCTGTTGGAATGGTTACTGGTAGGG TCATAAATGGTGACAGAGAACTCAAAAGAACCATGCTTCCGAAAATAAGCTCAGACTCCAAGTTGCGACCTTCTGACGCTCAGGAATTCAGATCTAAATC CTCTCCTGGCGTTGGAGTGAACAAATCAGATTGTTCAGTAGAGCCTACTAGTTCAGATACCAGCACAGCATTGAGGAATGAAATAGATAGTGGACCTTCT CCAAGAGACCGTATAGCTCATTTGGAGAAGAAAGCTATGGCAAAATCAAGCAATAAGTTAAATGTTCACGAGGAGAATCTAGCAGTCAGTCCTAGTACAG TGATAAAGACAAAAGTGTCACGGGCACCACGAACTGGGTCTATCATGCAACTAGACTCTTCACTTAAGGCACACCCTACATCCACGTCTCTCCAAGGTGC GGAACAGACTTCAAGTTCAAATAGAGTGCAAGTTCCAGGTATGGCAAGTAACCATAAACGGCAAATGTCCGCAGGTTCGTCTTCGCATGCAATGGCTCAG TGGGTTGGCCAGAGACCTCATAAAAACTCTCGGACGCGGAGAGCAAATATAATCACTCCTGTATCAAGTAATGCTGAAGCTCAGATATCTTCTCAAGGTT TTCTGCCTTCTGACTTTAGTGGTAGGACATCTTCCATTACCACCAATGGATCACTAGCTGCAAGCAGCTTGGATAATGGCACTCCAAAAACTAAAAGGGA GATAGAGAATTCTCCTTCGCCTTTTGGATTTTCTGAAAGTGAAGAATCGGGGGCTGGAGAAAATAAGATCAAAGATAAAAGAAGAGATAGTTTTGAGGCT CCTCCAACTATTTCACACAAAGGTGGCTCTTTTCCAATTCCATCTAAGAAGAACAAGTTACCGATTAACGAAGTTGGAGAAGGGGTGCGTAGGCAAGGAC GAACGGGCAGGAGTCCATCTTTAGCTAGACCAGGGGTTAATTCTGGGAGAGAGAAGTTAGAGAACCAACCGACAATGAAACCAATTCCAATTGTGAAGCC TCCTTCTGATAAGAATAAAAGCAAAACTGGTCGTCCACCTTCCAAAAAATTAAAAGATCGAAAAGCCGTGTGCCGAGCAGGCCCAGTGCTGAATGGAAAT TCTTCAGATTACACAGGTGAATCTGATGATGACGGTGAGGAACTATTTGCTGCTGCTAATTCTGCTCGGAATGCTTACCACCTGGCCTGCTCTGGCCCAT TTTGGAAAAAGATGGAACCTATATTTGCTTCTGTCAGCTCAGAGGACACTTCATATTTGAAGGATCAGCTGAGTTTTGCAGGGGAGCTAGATGAGAACTT GTCTCAGATGCTTGGCACTGAGTACAATGTCTTGGGTGTTCTGATGCACAAGGAGTCTCCTAATCTCTCCAGTGAAAAGCTAGCGAATGGGTGTAAACAG GACTCAACCAACTTGGCCACTTCTCTAAGTGCTCCACTATACCAAAGAGTTCTTTCAGCTCTGATTGAAGAAGATGAATATGAAGAATTTAACGTACACT GTGAAGGGAAAAATATGCATCCTCACTACGCTAGTGATGATTCTCATTGTGGTTCCTGTAACCTGATGGACATTGAACCCAGAGATAGGGATAGAACAGA ATCCGAAGTTGAATCTACAGTGAACTTCCAGACCCAACGGAGCTATTTCCTGGATGGATTTTCATGCAATAAAGGTATTGCATCTAACACCGTCAGGAAT CCGGTCATGTCTAGTTCTTTACTCAGCAATGGTCAATGGAAAGGCGGCGATGACGAGGTATCCCATTCGGATCTAATACATGGCAACGACATTTCTTCAA ACGACATGGGTTTGCTGCATACAAGGGAATATGCTATGCCTGGGTTTTCTTCATCTGATCGGCAGTATCAACTTATGTGTCTTGATGATCGGCTGATGTT GGAGTTACAGAGCATTGGTATATGTCCAGAGAAACTGCCTGATCTTGCAGAGGGAGAAGAGATCTTTAACCAAGACATTGTGGAACTTAAAGAGGGATTG CACGAACAGATTGGAGAAAAGAGAAGGAAGTTGGAGAAAATTGATAACGCTGTCTCGAGGGAAAAAGATTTGGGACGAAGCTCTTGTTTCAGGAGCATCG AGCAAACTGCAATGGACCAACTCATTGAAATTGCCTACAGGAAACGACTGGCATGCCGTGGAAACAGCACGTCAAAGGGCTCGGTTCGCAAGGTTCCTCG ACAAGTTGCGTTGAATTTCATCAGGCGCACACTCGGCAGATGCCGCAAGTTTGAAGACAGTGGCATCAGTTGCTTCAGTGAGCCAGCTTTACAGGAGGTT CTCTTCTCAAGACCTTCGTCCAACAACAATGATGCCAAATCTGCAGATTGCGTTGGCTCGGGAACTGCTAGTAACACACTGAATGATGTCGGTGACGCCA AAGCATCAGGAGCTGCTTCGAGTCCGTTTGAGAGATATGACTCCCCCTGCAACAACTTCGAACGAGGTAAGAAGCGGGAAGTCCTTATTAATGATCTTAT CGGTAGAGATCAAAACAAGGGTAAACTTAGAAGTCTTTCCTCTTCAGGAGTCAACAACAACGGATTCAAACCTGAGCGCAAGGCGAAAGCAAAGCCGAAG CAGAAGACCGCCGCGGCAGCTCCTCCTCCACCGCCTCCTCGAGCATCGAGCCATCACCCGACGCAGCCCCATTCCCAGAAGAGGACCAATGGGCCTGCGA ATATGGCCCATGATGGGTCTAGAGACACAGCAACAGCAGACGAGCCCATGGACTTGCCGCTGGATGACGAGCTTGGAGAGCACCAGGATCTCGGTTCGTT GTTTAATATGATCGAAGATGACGATGGCTTGCAAGACGATTACTCCGTCGGTTTGCAGATACCGATGGATGACCTTTCGGAATTGATTCTGATGTAG
AA sequence Show only first row Show all	>Lus10004878 pacid=23157186 polypeptide=Lus10004878 locus=Lus10004878.g ID=Lus10004878.BGIv1.0 annot-version=v1.0 MFGSGSSLSRGNATSPLDMPPLTECLPLEPITLGGHKFTRSGEIRRALGFGSASEDHSFGLAHPKPSPAVATEELKVFKESVQDTNRKARDRSKLLKDSI IKLEKYREVLTSKKRQRSDFSVGERPNGSSLAKMGSQIHRSPHDGMPQRLEDRAKSIGLNKRVRTSVADVRADIRSSPSPRQQMVMEKGADVLPDIGGGG ARFEEKIRRLPAGGEGWDTKNKKKRSVGMVTGRVINGDRELKRTMLPKISSDSKLRPSDAQEFRSKSSPGVGVNKSDCSVEPTSSDTSTALRNEIDSGPS PRDRIAHLEKKAMAKSSNKLNVHEENLAVSPSTVIKTKVSRAPRTGSIMQLDSSLKAHPTSTSLQGAEQTSSSNRVQVPGMASNHKRQMSAGSSSHAMAQ WVGQRPHKNSRTRRANIITPVSSNAEAQISSQGFLPSDFSGRTSSITTNGSLAASSLDNGTPKTKREIENSPSPFGFSESEESGAGENKIKDKRRDSFEA PPTISHKGGSFPIPSKKNKLPINEVGEGVRRQGRTGRSPSLARPGVNSGREKLENQPTMKPIPIVKPPSDKNKSKTGRPPSKKLKDRKAVCRAGPVLNGN SSDYTGESDDDGEELFAAANSARNAYHLACSGPFWKKMEPIFASVSSEDTSYLKDQLSFAGELDENLSQMLGTEYNVLGVLMHKESPNLSSEKLANGCKQ DSTNLATSLSAPLYQRVLSALIEEDEYEEFNVHCEGKNMHPHYASDDSHCGSCNLMDIEPRDRDRTESEVESTVNFQTQRSYFLDGFSCNKGIASNTVRN PVMSSSLLSNGQWKGGDDEVSHSDLIHGNDISSNDMGLLHTREYAMPGFSSSDRQYQLMCLDDRLMLELQSIGICPEKLPDLAEGEEIFNQDIVELKEGL HEQIGEKRRKLEKIDNAVSREKDLGRSSCFRSIEQTAMDQLIEIAYRKRLACRGNSTSKGSVRKVPRQVALNFIRRTLGRCRKFEDSGISCFSEPALQEV LFSRPSSNNNDAKSADCVGSGTASNTLNDVGDAKASGAASSPFERYDSPCNNFERGKKREVLINDLIGRDQNKGKLRSLSSSGVNNNGFKPERKAKAKPK QKTAAAAPPPPPPRASSHHPTQPHSQKRTNGPANMAHDGSRDTATADEPMDLPLDDELGEHQDLGSLFNMIEDDDGLQDDYSVGLQIPMDDLSELILM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22450			unknown protein		Lus10004878 [exp]	0	1
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	2.4	0.9015
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	3.6	0.9078
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	4.5	0.8802
AT3G45830			unknown protein		Lus10018121 [exp]	5.7	0.8959
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	6.5	0.8985
AT3G63340			Protein phosphatase 2C family ...		Lus10000491 [exp]	7.5	0.8710
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	7.9	0.8408
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	8.4	0.8771
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	8.9	0.8831
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	9.5	0.8909

Compare expression of checked genes

Lus10004878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.