Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44510 409 / 3e-142 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G08310 380 / 6e-131 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G22460 301 / 1e-99 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 280 / 5e-91 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 275 / 2e-89 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 273 / 4e-89 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 267 / 3e-86 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 263 / 7e-85 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 259 / 3e-83 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 248 / 6e-79 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020606 [exp] 699 / 0 AT3G44510 417 / 2e-146 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004880 [exp] 313 / 5e-104 AT5G22460 439 / 7e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008968 [exp] 295 / 6e-97 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 288 / 1e-94 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 287 / 4e-94 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 286 / 1e-93 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 284 / 1e-92 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 282 / 5e-92 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 280 / 4e-91 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164600 [exp] 509 / 0 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164900 [exp] 345 / 9e-117 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 331 / 2e-111 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237700 [exp] 289 / 6e-95 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 281 / 1e-91 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 279 / 4e-91 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 277 / 3e-90 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 276 / 2e-89 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G131300 [exp] 117 / 1e-28 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 116 / 5e-28 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004879 pacid=23157175 polypeptide=Lus10004879 locus=Lus10004879.g ID=Lus10004879.BGIv1.0 annot-version=v1.0 ATGAGATATCTACACAAATTCAAACTCGCAAGCAATCAACACCACCGCAGAAGAAGACCCAGTAGCTCCAACACTAACACTAGTATCATCATCCATCCTC CTCTCTCTTCTCCATTGCTGCAGCACCTCCGATCCAAATCTTCCCAATCCCAAAACGACGGAAGATTCGATCCCGGCCGCCGTCGCCACTCTCATTGGCT CCCTGACTTCATCTCCTCCAAGTTTCATCACTCGGGGATGGCGTCGACGACGGCGGTGGTTTTGATGATTGGTTTACTGGGTATGGTTTATCAGGCGACG CAGCTTTCTCCTCCGCCGCAGCAGCAGGCTGATCGGAAGGGTGAAGATCAGGCTGCCGACAGTGGTGATTCGGCGAGAATCAAGCTCGGTGATGGGAGGT ACTTGGCTTACAGGGAGAAAGGGGTCCCTTTAAGTAAAGCAAAATACAAAATCATTCTGGTCCATGGATTTGGAAGCTCCAAGGAGATGAACTTCTTGGC TCCTCAAGAATTGATAGAAGAGTTGGGGATCTGTTTCTTGATATACGACCGAGCCGGGTATGGAGACAGTGACCCGAACCCGACTAGATCCGTAAAGAGT GAGGCTTTAGACATTGAAGAGCTTGCTGACCAACTCGAGCTAGGATCGAAGTTCTACGTCATTGGTGTCTCCATGGGATCCTATCCGGTTTGGAGTTGCC TCAAGCTAGAAGGTGCTGCATTGATCGTCCCGGTTGTGAATTACAAGTGGACCTCTCTTCCTAAAAGTCTCATAAGAGATGACTATAGGAGGAGACTTGT ACAGTTGACATACTGGTTTTCATACTACGCACCAGGGCTGTTACACTGGTGGGTTACCCAGAACTGGCTCCCTTCGAGCTCTGTCCTCGAAAGGAACCGG ATGTTCTTCAACCCTCACGACATCGAGGTCTTGAAGAAGATACCCGGGTTCCCAATGCTAAGCAAGAAGAAGTTAGTCGAGCGCGAGGTGTTCGACACTC TCCGTCACGATTTCATGGTGGGTTTCGGGGACTGGGAGTTCGATCCGACGGAGCTGAAGAACCGGTCTCCTACTTTGAACGAAAGCAACGTACACATCTG GCAAGGCTACGAGGACAGGGTTGTCCCGTTTCAGCTGCAGAGGTTCATCTCGGGGAAGCTGCCGTGGATTCGATACCACGAAGTCCCGGAAGGCGGACAC TTGATTGTGCACTACAGTGGGTTAGGTGAAGCTGTTTTGAAGTCACTCTTGCTTGGGGAAGAGCCTCTTACTCTAGATCATGTACAACCATAG
AA sequence Show only first row Show all	>Lus10004879 pacid=23157175 polypeptide=Lus10004879 locus=Lus10004879.g ID=Lus10004879.BGIv1.0 annot-version=v1.0 MRYLHKFKLASNQHHRRRRPSSSNTNTSIIIHPPLSSPLLQHLRSKSSQSQNDGRFDPGRRRHSHWLPDFISSKFHHSGMASTTAVVLMIGLLGMVYQAT QLSPPPQQQADRKGEDQAADSGDSARIKLGDGRYLAYREKGVPLSKAKYKIILVHGFGSSKEMNFLAPQELIEELGICFLIYDRAGYGDSDPNPTRSVKS EALDIEELADQLELGSKFYVIGVSMGSYPVWSCLKLEGAALIVPVVNYKWTSLPKSLIRDDYRRRLVQLTYWFSYYAPGLLHWWVTQNWLPSSSVLERNR MFFNPHDIEVLKKIPGFPMLSKKKLVEREVFDTLRHDFMVGFGDWEFDPTELKNRSPTLNESNVHIWQGYEDRVVPFQLQRFISGKLPWIRYHEVPEGGH LIVHYSGLGEAVLKSLLLGEEPLTLDHVQP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10004879 [exp]	0	1
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	11.4	0.7078
AT5G63410			Leucine-rich repeat protein ki...		Lus10029659 [exp]	19.9	0.6728
AT1G69080			Adenine nucleotide alpha hydro...		Lus10019173 [exp]	20.4	0.6348
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	23.2	0.6793
AT1G77580			Plant protein of unknown funct...		Lus10025674 [exp]	33.7	0.6389
AT2G45050	GATA	GATA2	GATA transcription factor 2 (....		Lus10028178 [exp]	34.3	0.6513
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	37.7	0.6124
AT3G52500			Eukaryotic aspartyl protease f...		Lus10005212 [exp]	65.8	0.6048
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Lus10020119 [exp]	92.0	0.5965
AT1G29530			unknown protein		Lus10004585 [exp]	98.3	0.5808

Compare expression of checked genes

Lus10004879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.