Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22460 424 / 7e-149 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 350 / 3e-119 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 343 / 2e-116 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 339 / 2e-115 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 335 / 1e-113 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 330 / 5e-112 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 328 / 1e-110 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 321 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 314 / 2e-105 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 284 / 4e-94 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004882 [exp] 486 / 1e-173 AT5G22460 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008968 [exp] 362 / 4e-124 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 357 / 3e-122 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 356 / 6e-122 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 354 / 3e-121 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 353 / 3e-120 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10020603 [exp] 342 / 4e-118 AT5G22460 230 / 6e-75 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10021371 [exp] 347 / 9e-118 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10022722 [exp] 338 / 1e-114 AT3G48410 429 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203700 [exp] 489 / 2e-174 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164900 [exp] 390 / 1e-135 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237700 [exp] 363 / 8e-125 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 357 / 2e-122 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 353 / 5e-121 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 344 / 2e-117 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 339 / 8e-115 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 321 / 1e-108 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 110 / 2e-26 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 108 / 6e-26 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10004880 pacid=23157151 polypeptide=Lus10004880 locus=Lus10004880.g ID=Lus10004880.BGIv1.0 annot-version=v1.0 ATGCAACCAAGCAAAAAGATCTCAGCTTCATCAGCCAGAGCTCACACCAGAAGAAGAAACAGTAACAGCAGCAGAGAACCAAAAGCGATGTTGTTTGTGC CGGTAGCTGTGGCGGTAACGGTGGGATTTCTGGGATGGGTTTATCAGTACTCGTTGAAACCTCCACCTCCCAGAATCTGTGGTTCAGCTGGTGGCCCTGA AATCACATCTCCTAGGGTGAAGCTTCATGATGGGAGGCATTTGGCTTACAAGGAAGTGGGAGTTTCCAAGGAAGAAGCTAAGCATAAGATTATCATCATT CATGGCTTTGATGCTTCTAAAGACATGGGACTTTCTATCCCACAGGAACTTATGGAGGAACTCAGCATATACATATTAACATTTGACAGAGCGGGATACG GAGAGAGTGATCCATACCCGTCACGATCAGTAAAGAGCGAAGCCTACGACATCGAAGAACTTGCTGATAAGCTGCAGATTGGTCCCAAGTTTCATGTCAT TGGGATCTCAATGGGAGGCTATCCGGCTTACAGTTGTCTCAAATACATACCACATAGGCTGGCTGGAGTGGCTTTGGTGGTTCCATTTGTGCACTACTGG TGGCCTTGTCTTCCTCCGGACCTGGCGAGTCTCGGATTGCAGAAGCTTCTTCCGATGGATCGAAGGACGTTCTACGTTGCACACTATGCACCTTGGCTCT TCTATTGGTGGATGTCTCAGAAATGGTTCCCTTCATTGAGCATGATGGCTGGGAACATGGCTGTTTTCTCCCCTCAAGATATGGAGATGATTGCCGAGAT GGTTAAGTCTCCGAATCCCGGTCAGGAAAAGATTAGGCAGCAAGGCATCCATGAATCTCTGCATCGCGACATACTAGCCGGGTATGCGAAATGGGAATTC GATCCCATGGACTTGACCAATCCATTCCCGAACAGTGAAGGTTCGGTACATCTATGGCAGGGCTCCGAGGACCGAATCATTCCACGGGAGATAAACCGGT ACCTTGCCGAAAGGATACCATGGATTCGGTACCACGAGGTTGAAGATGCCGGTCACTTGTTCATCGGCAAGGAGGAACACTTTGAGACTGTTCTAAGAGC ACTTGTTCATACTTAG
AA sequence Show only first row Show all	>Lus10004880 pacid=23157151 polypeptide=Lus10004880 locus=Lus10004880.g ID=Lus10004880.BGIv1.0 annot-version=v1.0 MQPSKKISASSARAHTRRRNSNSSREPKAMLFVPVAVAVTVGFLGWVYQYSLKPPPPRICGSAGGPEITSPRVKLHDGRHLAYKEVGVSKEEAKHKIIII HGFDASKDMGLSIPQELMEELSIYILTFDRAGYGESDPYPSRSVKSEAYDIEELADKLQIGPKFHVIGISMGGYPAYSCLKYIPHRLAGVALVVPFVHYW WPCLPPDLASLGLQKLLPMDRRTFYVAHYAPWLFYWWMSQKWFPSLSMMAGNMAVFSPQDMEMIAEMVKSPNPGQEKIRQQGIHESLHRDILAGYAKWEF DPMDLTNPFPNSEGSVHLWQGSEDRIIPREINRYLAERIPWIRYHEVEDAGHLFIGKEEHFETVLRALVHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004880 [exp]	0	1
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Lus10005977 [exp]	2.0	0.8425
AT1G68185			Ubiquitin-like superfamily pro...		Lus10034627 [exp]	9.4	0.7747
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10031344 [exp]	11.9	0.8041
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	14.6	0.8000
AT3G16175			Thioesterase superfamily prote...		Lus10006837 [exp]	20.4	0.7817
AT4G16800			ATP-dependent caseinolytic (Cl...		Lus10010994 [exp]	29.7	0.7979
AT4G38090			Ribosomal protein S5 domain 2-...		Lus10035937 [exp]	32.6	0.7722
AT4G34960			Cyclophilin-like peptidyl-prol...		Lus10025052 [exp]	50.1	0.7635
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	50.9	0.7642
AT5G64010			unknown protein		Lus10035852 [exp]	51.6	0.7784

Compare expression of checked genes

Lus10004880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.