Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22460 173 / 4e-52 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 157 / 2e-45 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 151 / 1e-43 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 145 / 3e-41 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 144 / 6e-41 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 144 / 8e-41 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 133 / 1e-36 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 129 / 3e-35 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 121 / 2e-32 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 95 / 2e-23 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004880 [exp] 295 / 4e-99 AT5G22460 439 / 7e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004882 [exp] 285 / 2e-96 AT5G22460 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017051 [exp] 155 / 6e-45 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 153 / 6e-44 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 151 / 9e-44 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10028854 [exp] 147 / 1e-43 AT2G36290 275 / 2e-92 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 147 / 3e-42 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10020603 [exp] 143 / 6e-42 AT5G22460 230 / 6e-75 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10014191 [exp] 144 / 1e-40 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203700 [exp] 213 / 8e-68 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G021400 [exp] 154 / 8e-45 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 153 / 2e-44 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 149 / 5e-43 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 147 / 3e-42 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G021000 [exp] 146 / 2e-41 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 142 / 2e-40 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 126 / 3e-34 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G021301 [exp] 62 / 4e-12 AT1G74300 65 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G131300 [exp] 45 / 3e-05 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004881 pacid=23157154 polypeptide=Lus10004881 locus=Lus10004881.g ID=Lus10004881.BGIv1.0 annot-version=v1.0 ATGGATTTATCAGTACTCGTTGAAGCCTCCACTTCCGAAAATCTGCGGTTCTTCTGGTGCCCTGCAATCACTTATCCAAGGGTGAAGCTTCACGATGGGA GGCATTTGGCTTACAAGGAAATGGGAGTTTCCAAGGAAGAAGCTAACCAGAAGATCATCGTCATTCATGGGTTCAATGCTTCTAAAGATTTGTGGCATCC TGTCCCACCGGCTCTGGTGGTCCCATTTGTGCACTATTGGTGGCCTTGTCTTCCTCCGGACCTGTCGAGGCTCGGGCTGCAGAAGCTTGGTCCGGTGGAC CGGATGATGTTCTACGTTGCACACTATGCACCATGGCTGTTCCATTGGTGGATGTCTCAGAAATGGGTCACGGATGCTGGGATCATGGCAGTTTTCTCCC CTCAAAATATGGTGATGATCGCCGAGATGGTCAAGTCTCCGAACCCTGGCCAGGAAAAAGTTAGGCAGCAAGGGATCCATGAATCGCTGCATCGAGACAT ACTAACCGGATATGCGAAATGGGAATTCGATCCTGTAGACTTGACCAATCAATTGATCCATGAATCGCTGCATCGAGACATACTAACCGGATATGCGAAA TGGGAATTCGATCCTGTGGACTTGACCAATCCATTCCCGAACAGCGAAGGCTCGGTGCATATATGGCAGGGCACTGAGGACCGAATCATTCCACAGGAGA TAAACCGGTACCTTGCCGAAAAGATTCCGTGGATTCGGTACCACGAGGTTGAAGATTCTGGTCACTTGTTCTTCAAGAAGGAGGAACACTTTTGA
AA sequence Show only first row Show all	>Lus10004881 pacid=23157154 polypeptide=Lus10004881 locus=Lus10004881.g ID=Lus10004881.BGIv1.0 annot-version=v1.0 MDLSVLVEASTSENLRFFWCPAITYPRVKLHDGRHLAYKEMGVSKEEANQKIIVIHGFNASKDLWHPVPPALVVPFVHYWWPCLPPDLSRLGLQKLGPVD RMMFYVAHYAPWLFHWWMSQKWVTDAGIMAVFSPQNMVMIAEMVKSPNPGQEKVRQQGIHESLHRDILTGYAKWEFDPVDLTNQLIHESLHRDILTGYAK WEFDPVDLTNPFPNSEGSVHIWQGTEDRIIPQEINRYLAEKIPWIRYHEVEDSGHLFFKKEEHF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10004881 [exp]	0	1
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Lus10022256 [exp]	8.7	0.7417
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10008770 [exp]	9.5	0.8050
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10022233 [exp]	13.6	0.7920
AT4G33920			Protein phosphatase 2C family ...		Lus10019302 [exp]	25.0	0.7539
AT5G17890		CHS3, DAR4	CHILLING SENSITIVE 3, DA1-rela...		Lus10025852 [exp]	28.7	0.7847
AT4G27290			S-locus lectin protein kinase ...		Lus10038557 [exp]	30.0	0.6714
					Lus10027053 [exp]	30.6	0.7585
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10033998 [exp]	30.6	0.7573
					Lus10021794 [exp]	33.2	0.6647
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10024389 [exp]	36.3	0.7028

Compare expression of checked genes

Lus10004881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.