Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22460 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 303 / 1e-101 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 297 / 1e-99 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 294 / 3e-98 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 288 / 4e-96 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 284 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 274 / 9e-91 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 254 / 5e-83 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 246 / 9e-80 alpha/beta-Hydrolases superfamily protein (.1) AT3G44510 221 / 2e-70 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004880 [exp] 504 / 0 AT5G22460 439 / 7e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008968 [exp] 302 / 2e-101 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 301 / 4e-101 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 302 / 5e-101 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 298 / 4e-100 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10022722 [exp] 298 / 1e-99 AT3G48410 429 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 297 / 2e-99 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 293 / 2e-97 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10004881 [exp] 286 / 2e-96 AT3G48410 173 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203700 [exp] 407 / 7e-143 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164900 [exp] 318 / 5e-108 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G021400 [exp] 307 / 2e-103 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 302 / 8e-102 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 297 / 7e-100 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 291 / 3e-97 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 284 / 4e-94 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 256 / 5e-84 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 100 / 3e-23 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 93 / 8e-21 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004882 pacid=23157163 polypeptide=Lus10004882 locus=Lus10004882.g ID=Lus10004882.BGIv1.0 annot-version=v1.0 ATGTTGTTTGTGCCGATAACTGTGGCGTTAACGGTAGGAGTTCTGGGATGGATATATCAGTATTTGTTGAAGCCTCCACCTTCGAGAATCTGCGGTTCTT CCGGTGGCCCTGCAATCACTTCTCCTAGGGTGAAGCTTCATGATGGGAGGCATTTGGCTTACAAGGAAGTGGGAGTTCCCAAGGAAGAAGCTAAGCATAA AGTCATCTTCATTCATGGCTATGATGTTTCTAAAGATACCAGGCTTCCTATCCCAGAGGGAATTTTGGAGGAACTGGGCATATATATGTTGAGATTTGAT AGAGCAGGCTATGGCGACAGTGATCCATACCCGTCGCGATCAGTCAAGAGCGAAGCCTACGACATTGAAGAACTCGCCGATAAGCTGCATATCGGATCAA AGCTGGCTGGACTGACTCTGGCGGCTCCATTTATCAACTATTGGTGGCCTTGCCTTCCTCGGGACCTGTCGAGGTTCGGATGGCAGAAGCTTCTTCCGAT GGACCGGAGGGCGTTCTATGTTGCACATTATGCACCTTGGCTCTTCTATTGGTGGATGTCTCAGAAATGGTTCCCTTCATTTAGCCGGAGTGTTGGGGAC ATGTCTGTTTTCTCCCCTCAAGATATCGAGATACTCGCCGCCGAAAGCGCTAAATCTCCGGACCCGGGTCAGGAAAAAGTTAGGCAGCAAGGCATCCATG AATCTCTGCATAGAGACATACTAGCCGGGTATGCGAAATGGGAATTCGATCCCATGGACTTGACCGATCCATTTCCGAACGGTGAAGGTGCGGTACACAT GTGGCAGGGCTCCGACGATCGGATCACTCGACCGCAGATAAACCGGTTCGTGGCCGAAAAGCTTCCCTGGATTCGGTACCATGAGGTTGAAGATACTGGT CACACTTTCAGGGAGGAACAATATGAGGCATTTTTAAGAACACTAATTGGTCATACTTGA
AA sequence Show only first row Show all	>Lus10004882 pacid=23157163 polypeptide=Lus10004882 locus=Lus10004882.g ID=Lus10004882.BGIv1.0 annot-version=v1.0 MLFVPITVALTVGVLGWIYQYLLKPPPSRICGSSGGPAITSPRVKLHDGRHLAYKEVGVPKEEAKHKVIFIHGYDVSKDTRLPIPEGILEELGIYMLRFD RAGYGDSDPYPSRSVKSEAYDIEELADKLHIGSKLAGLTLAAPFINYWWPCLPRDLSRFGWQKLLPMDRRAFYVAHYAPWLFYWWMSQKWFPSFSRSVGD MSVFSPQDIEILAAESAKSPDPGQEKVRQQGIHESLHRDILAGYAKWEFDPMDLTDPFPNGEGAVHMWQGSDDRITRPQINRFVAEKLPWIRYHEVEDTG HTFREEQYEAFLRTLIGHT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	1.0	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	1.4	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	1.7	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	2.0	1.0000
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	2.2	1.0000
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	2.4	1.0000
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10009926 [exp]	3.5	0.9990
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	3.7	1.0000
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	4.0	1.0000
					Lus10026426 [exp]	4.1	0.9602

Compare expression of checked genes

Lus10004882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.