Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08540 608 / 0 DNA-directed RNA polymerase II protein (.1) AT1G77890 335 / 2e-110 DNA-directed RNA polymerase II protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020601 [exp] 964 / 0 AT4G08540 629 / 0.0 DNA-directed RNA polymerase II protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090900 [exp] 727 / 0 AT4G08540 652 / 0.0 DNA-directed RNA polymerase II protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004883 pacid=23157159 polypeptide=Lus10004883 locus=Lus10004883.g ID=Lus10004883.BGIv1.0 annot-version=v1.0 ATGAGCAAGCAAAAGTCGAGTAGCTGTGGAATCTGTGAGAATACGAATCGTGCTTCGGTTTGTGCAGTTTGTGTCAATTACAGGTTGAATGAATTCAGCA ATTTGTTGAAATCGTTGAAGAGCCGTAGGGATTCCCTGTATTCTAGACTAAGTGAAGTCCTTGTGGCGAAGGGGAAAGCAGATGATCAGTTAAATTGGAG AGTACAACACAATGAGAAGGTTGTGAGTTTGAAGGAGAAGCTCCGTGGGAGTAAAGAACGACTAGTTCAAGGGAAGAGTAAGGTTGAGAGGATGTCCTAT GATCTGAAGCTCAAGTATGGTGTACTCGATTCCGCTCGTGCTTTGTTGGAAAAGAACCGCGTGGAGCAACTTGAAAAGTTCTATCCGAACCTTATTTGCA CTCAGAGTTTGGGCCATATGGCTATTACCTCAGAACTACTTCATAAACAGTCTGTGGTAATAAAACAGATATGCAAATTGCTGCCTCAACGGAAGGTGAA AATTGATGGGGAGAGAACCAGTGGTCAATTTGATCAAATCTGCAATGCACGCTTACCAAGAGGACTTGACCCCCACTCTGTTCCAGTGGTAGAGCTTGGT GCCTCATTGGGATACATGGTGCAGCTTCTGAATCTTGTTGTTCGTAACTTGGCTGCCCCTGCACTTCATAACTCCGGTTTTGCGGTTAGTTCAGCTGTGT CTCTTATTGGGTTTTTCCCTGCTGATCACCTTTTCCTTCTTATTATGGATTCTGGACCAACTTTTGGCTCTAGCTCTCGAATATGGCAGCGAGATTCTTA CTGGAATGCACGCCCCTCATCAAGAAGCAATGAATATCCTCTTTTTATACCCCGCCAGAATTATTGCTCAACGAGTGGAGAAAATTCGGTTACCGAGTCT GATAAAAGCTCAAGTAACTTCGGTGTGTCATCAATAGAGTCAGAAAGAAAGGCGTATCTCGATTCTTCTCGGAACGGTAGCTTTAACTACTCATCAGCCT CTCCACATTCGGTTGAAACACATGAGGACTTGCAGAAAGGGATTGCACTTCTGAAGAAAAGTGTGGCTTGTATGACCGCTTATTGCTACAACATGCTGTG CTTAGAGATTCCTTCTGAGACATCTACCTTTGAAGCCTTTGCAAGACTGTTATCGACACTTTCTTCTTCAAAGGAAGTCCGGTCGGTTTTCTCCTTGAAA ATGGCTTGTTCAAGGTCAGGTAAACAAGTTCAGAAACTGAACAAATCAGTGTGGAATGTAAATTCAGGAATTTCGTCGAGCGGTTTACTAGAAAGCGCAC ATGCTCTGCATCTAACGAAGAACATTGGCGAATACAACCTCCTAAATTCGACAACCAGTTTCCTCTACGCCTCGGAGAGACCAGAGGCAGGGAAATACGA GAGCCTCGTCGATGGATGGGACCTAGTGGAACACCCTAAATTCCCTCCGCCTCCCTCGCAGACCGAAGACATCGAGCACTGGACTCGCGCCATGTTCATC GACGTGACCAAGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10004883 pacid=23157159 polypeptide=Lus10004883 locus=Lus10004883.g ID=Lus10004883.BGIv1.0 annot-version=v1.0 MSKQKSSSCGICENTNRASVCAVCVNYRLNEFSNLLKSLKSRRDSLYSRLSEVLVAKGKADDQLNWRVQHNEKVVSLKEKLRGSKERLVQGKSKVERMSY DLKLKYGVLDSARALLEKNRVEQLEKFYPNLICTQSLGHMAITSELLHKQSVVIKQICKLLPQRKVKIDGERTSGQFDQICNARLPRGLDPHSVPVVELG ASLGYMVQLLNLVVRNLAAPALHNSGFAVSSAVSLIGFFPADHLFLLIMDSGPTFGSSSRIWQRDSYWNARPSSRSNEYPLFIPRQNYCSTSGENSVTES DKSSSNFGVSSIESERKAYLDSSRNGSFNYSSASPHSVETHEDLQKGIALLKKSVACMTAYCYNMLCLEIPSETSTFEAFARLLSTLSSSKEVRSVFSLK MACSRSGKQVQKLNKSVWNVNSGISSSGLLESAHALHLTKNIGEYNLLNSTTSFLYASERPEAGKYESLVDGWDLVEHPKFPPPPSQTEDIEHWTRAMFI DVTKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08540			DNA-directed RNA polymerase II...		Lus10004883 [exp]	0	1
AT4G30790			unknown protein		Lus10007701 [exp]	1.7	0.8689
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	2.0	0.8556
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	6.5	0.8476
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	8.8	0.8174
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	11.3	0.8022
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	15.6	0.7919
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	15.8	0.8217
AT1G03080			kinase interacting (KIP1-like)...		Lus10014687 [exp]	18.3	0.8172
AT5G49570		ATPNG1	peptide-N-glycanase 1 (.1)		Lus10009179 [exp]	20.2	0.8295
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	20.8	0.8264

Compare expression of checked genes

Lus10004883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.