Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27550 195 / 4e-64 ATC centroradialis (.1) AT5G03840 189 / 1e-61 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 151 / 8e-47 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G65480 133 / 1e-39 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 119 / 4e-34 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 114 / 2e-32 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020600 [exp] 276 / 9e-96 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10004886 [exp] 215 / 6e-72 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10043385 [exp] 206 / 2e-68 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10027442 [exp] 181 / 3e-58 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10021372 [exp] 176 / 3e-56 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 173 / 5e-55 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10019541 [exp] 154 / 3e-48 AT2G27550 188 / 5e-62 centroradialis (.1) Lus10013532 [exp] 132 / 4e-39 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004452 [exp] 127 / 4e-35 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165100 [exp] 203 / 3e-67 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.004G203900 [exp] 198 / 2e-65 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.015G141300 [exp] 132 / 8e-40 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.008G077700 [exp] 131 / 5e-39 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 125 / 1e-36 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 116 / 4e-33 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 64 / 8e-14 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 64 / 1e-13 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10004884 pacid=23157168 polypeptide=Lus10004884 locus=Lus10004884.g ID=Lus10004884.BGIv1.0 annot-version=v1.0 ATGGGGAAAGTAGTGTCAGATCCACTTGTGGTTGGGAGAGTGATTGGAGATGTCATTGATGGCTTCAACCCAAGTGTTAAGATGAGCGTCACTTACAATA AGCAAGTATTTAATGGCCATGAGTTCTTCCCTTCTGATCTCTCCCTCAAGCCCAAAGTTCATGTCCTTTGTGGTGATCTCAGATCCGTTTTCACCCTTGT GATGACGGATCCAGATGTTCCGGGACCTAGTGATCCATACTTGAGAGAGCACTTACACTGCTCGATTTTCGGGCTAAACTCGACATATGTAGACCACTAT ATATGTATAGTGACTCGCATGAAATCATGTGATTCGATTGCAGGGAAGGAGGTGGTGAGCTACGAGATGCCGAAGCCAATCATAGGGATCCACAGGTTGG TGTTGGTGCTCTTCAAACAGAAGACAAGAGGCCAATTGTCTAGTAGTAATGTTTCAACATCAAGGGACAACTTCAACACCAGGAAGTTTGCTCAATGCAA TGAGCTTGGCCCTCCTGTTGCTGCTGTTTTCTTCAATGTTCAAAGGGAAACGGCCGCTAGGCGGCGCTAA
AA sequence Show only first row Show all	>Lus10004884 pacid=23157168 polypeptide=Lus10004884 locus=Lus10004884.g ID=Lus10004884.BGIv1.0 annot-version=v1.0 MGKVVSDPLVVGRVIGDVIDGFNPSVKMSVTYNKQVFNGHEFFPSDLSLKPKVHVLCGDLRSVFTLVMTDPDVPGPSDPYLREHLHCSIFGLNSTYVDHY ICIVTRMKSCDSIAGKEVVSYEMPKPIIGIHRLVLVLFKQKTRGQLSSSNVSTSRDNFNTRKFAQCNELGPPVAAVFFNVQRETAARRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27550		ATC	centroradialis (.1)		Lus10004884 [exp]	0	1
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10002168 [exp]	2.4	0.8869
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Lus10040851 [exp]	3.9	0.8641
AT4G15620			Uncharacterised protein family...		Lus10012562 [exp]	6.6	0.8631
AT2G47640			Small nuclear ribonucleoprotei...		Lus10007876 [exp]	12.3	0.8326
AT5G48905		LCR12	low-molecular-weight cysteine-...		Lus10017233 [exp]	14.1	0.8304
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10043114 [exp]	17.0	0.8192
AT3G13898			unknown protein		Lus10008387 [exp]	17.9	0.8693
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10014933 [exp]	18.3	0.7561
AT1G11240			unknown protein		Lus10018438 [exp]	19.6	0.8087
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10030108 [exp]	22.3	0.8355

Compare expression of checked genes

Lus10004884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.