Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21720 357 / 2e-127 PBC1 proteasome beta subunit C1 (.1) AT1G77440 352 / 1e-125 PBC2 20S proteasome beta subunit C2 (.1.2) AT3G60820 72 / 1e-15 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT4G31300 42 / 0.0001 PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020599 [exp] 396 / 5e-143 AT1G21720 355 / 7e-127 proteasome beta subunit C1 (.1) Lus10015867 [exp] 77 / 2e-17 AT3G60820 379 / 2e-135 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10009294 [exp] 74 / 2e-15 AT1G48050 835 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Lus10006426 [exp] 63 / 7e-12 AT3G26340 462 / 7e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10011369 [exp] 63 / 7e-12 AT3G26340 465 / 1e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180500 [exp] 356 / 4e-127 AT1G21720 391 / 9e-141 proteasome beta subunit C1 (.1) Potri.002G080800 [exp] 352 / 9e-126 AT1G21720 383 / 1e-137 proteasome beta subunit C1 (.1) Potri.002G148300 [exp] 72 / 1e-15 AT3G60820 387 / 2e-138 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.014G069800 [exp] 69 / 2e-14 AT3G60820 362 / 6e-129 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.008G177000 [exp] 66 / 6e-13 AT3G26340 473 / 7e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.018G145900 [exp] 42 / 6e-05 AT4G31300 405 / 3e-145 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.006G077900 [exp] 39 / 0.0007 AT4G31300 416 / 2e-149 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit
Representative CDS sequence Show only first row Show all	>Lus10004885 pacid=23157176 polypeptide=Lus10004885 locus=Lus10004885.g ID=Lus10004885.BGIv1.0 annot-version=v1.0 ATGGTGGGGAAGAACTGCTTCGCCATAGCTAGCGATCGCCGATTGGGAGTCCAGCTCCAGACCGTCGCCACGGATTTCCAGCGCATCTATAAAATTCACG ACAAGCTCTTCTTCGGGCTTTCTGGATTGGCCTCCGACGCTCAGACTTTGCATCAGAGGCTGATGTTTCGCCATAAGCTGTATCAGCTGAGGGAAGAGAG GGATATGAAGCCTGAGACTTTCTCCAGCCTTGTCTCCGCTATTCTTTATGAGAAAAGGTTTGGTCCATATTTCGTCCAACCTGTAATTGCTGGACTAAGC GATGATGATCAGCCATTCATTTGTACGATGGATTCTATTGGTGCCAAGGAATTGGCAAAAGATTTTGTCGTCGGAGGCACAGCTGGAGAGTCTCTTTATG GTGCTTGTGAGGCAATGTTCAAGCCTGACATGGAACCTGAGGAGTTATTCGAGACTCTCTCGCAAGCACTTCTGGCTTCAGTGGATCGGGATTGTCTAAG TGGATGGGGAGGACACATCTATCTTGTTACCCCGACTGAGATCAAAGAATGCACCTTGAAGGGAAGGATGGACTGA
AA sequence Show only first row Show all	>Lus10004885 pacid=23157176 polypeptide=Lus10004885 locus=Lus10004885.g ID=Lus10004885.BGIv1.0 annot-version=v1.0 MVGKNCFAIASDRRLGVQLQTVATDFQRIYKIHDKLFFGLSGLASDAQTLHQRLMFRHKLYQLREERDMKPETFSSLVSAILYEKRFGPYFVQPVIAGLS DDDQPFICTMDSIGAKELAKDFVVGGTAGESLYGACEAMFKPDMEPEELFETLSQALLASVDRDCLSGWGGHIYLVTPTEIKECTLKGRMD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	0	1
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	1.0	0.8888
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	2.0	0.8622
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10023702 [exp]	2.4	0.8530
AT3G25545			unknown protein		Lus10029095 [exp]	2.8	0.8399
AT3G17120			unknown protein		Lus10010906 [exp]	3.7	0.7835
AT1G07020			unknown protein		Lus10042256 [exp]	4.9	0.7931
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10012155 [exp]	5.0	0.8069
AT1G30580			GTP binding (.1)		Lus10023261 [exp]	5.2	0.7622
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	6.9	0.7749
AT5G66140		PAD2	proteasome alpha subunit D2 (....		Lus10028437 [exp]	11.0	0.7235

Compare expression of checked genes

Lus10004885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.