Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27550 267 / 2e-92 ATC centroradialis (.1) AT5G03840 254 / 1e-87 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 215 / 6e-72 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G65480 191 / 2e-62 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 181 / 1e-58 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 171 / 1e-54 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020600 [exp] 285 / 2e-99 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10043385 [exp] 273 / 5e-95 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10021372 [exp] 249 / 1e-85 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10027442 [exp] 248 / 7e-85 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 239 / 2e-81 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004884 [exp] 239 / 2e-81 AT2G27550 218 / 3e-73 centroradialis (.1) Lus10019541 [exp] 204 / 5e-68 AT2G27550 188 / 5e-62 centroradialis (.1) Lus10013532 [exp] 191 / 2e-62 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004452 [exp] 190 / 3e-59 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165100 [exp] 278 / 6e-97 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.004G203900 [exp] 271 / 5e-94 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.008G077700 [exp] 195 / 5e-64 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 187 / 3e-61 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 182 / 3e-59 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G141300 [exp] 176 / 8e-57 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 92 / 8e-25 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 92 / 1e-24 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10004886 pacid=23157144 polypeptide=Lus10004886 locus=Lus10004886.g ID=Lus10004886.BGIv1.0 annot-version=v1.0 ATGCAGGAGAAATCGATGGGGAAAGTGTTGTTGCCAGCAGATTCACTAGTGATTGGGAGAGTAATAGGAGATGTAATTGACTTGTTCAACCCAAGTGTGA AGATGACTGTAACTTACAACTCCACCAAGCAAGTCTTCAATGGCCATGAGTTCTTCCCTTCTCTTGTTTCCCACATGCCTAAGGTTGAAGTCCTTGGTGG TGATCTCAGATCCCTTTTCACCCTGGTGATGACTGATCCAGATGTGCCAGGCCCTAGTGATCCATACGTGAAAGAGCATTTACACTGGGTAGTGACTGAT ATCCCAGGCACTACAAATGCAACATTTGGGAGGGAAATTGTGAGCTACGAGATGCCGAGGCCAACCATAGGGATACACAGGTTCGTGTTCCTGCTGTTCA AGCAGAAGAGAAGAGGCCAAACCCTAGTATTCAATTCGCCGTCGAGGGACAATTTTAGGACTAGGAAGTTTGCTAAAGACAACGACCTTGGTCTCCCCGT TGCCGCCGTTTTCTTCAATGCTCAGCGCGAGACAGCAGCCAGGAGGCGTTAG
AA sequence Show only first row Show all	>Lus10004886 pacid=23157144 polypeptide=Lus10004886 locus=Lus10004886.g ID=Lus10004886.BGIv1.0 annot-version=v1.0 MQEKSMGKVLLPADSLVIGRVIGDVIDLFNPSVKMTVTYNSTKQVFNGHEFFPSLVSHMPKVEVLGGDLRSLFTLVMTDPDVPGPSDPYVKEHLHWVVTD IPGTTNATFGREIVSYEMPRPTIGIHRFVFLLFKQKRRGQTLVFNSPSRDNFRTRKFAKDNDLGLPVAAVFFNAQRETAARRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27550		ATC	centroradialis (.1)		Lus10004886 [exp]	0	1
AT5G25330			Core-2/I-branching beta-1,6-N-...		Lus10002919 [exp]	2.4	0.8846
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015330 [exp]	3.0	0.9035
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	4.5	0.8925
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Lus10006000 [exp]	5.2	0.8913
AT1G73190		ALPHA-TIP, TIP3...	ALPHA-TONOPLAST INTRINSIC PROT...		Lus10042375 [exp]	6.5	0.8653
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Lus10041257 [exp]	6.7	0.8744
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	8.7	0.8859
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Lus10025230 [exp]	9.9	0.8837
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10043010 [exp]	11.3	0.8731
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10030967 [exp]	12.7	0.8809

Compare expression of checked genes

Lus10004886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.