Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08290 352 / 2e-120 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT1G51220 300 / 2e-100 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT3G57670 301 / 8e-100 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT3G20880 296 / 9e-98 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G13290 292 / 2e-97 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G34790 281 / 4e-93 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G34370 114 / 1e-28 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 100 / 2e-23 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G03150 91 / 7e-20 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G55110 88 / 8e-19 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020597 [exp] 635 / 0 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10031271 [exp] 312 / 3e-104 AT3G57670 379 / 6e-131 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10031838 [exp] 310 / 3e-103 AT3G57670 386 / 4e-133 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10021700 [exp] 297 / 5e-99 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10035044 [exp] 296 / 6e-99 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10029525 [exp] 287 / 2e-95 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10039613 [exp] 280 / 7e-93 AT3G57670 300 / 9e-101 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10020923 [exp] 280 / 2e-92 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033454 [exp] 278 / 8e-92 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143700 [exp] 395 / 1e-137 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 388 / 1e-134 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.003G205000 [exp] 322 / 9e-109 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.016G052700 [exp] 321 / 4e-108 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G018900 [exp] 312 / 3e-105 AT1G51220 353 / 7e-122 WIP domain protein 5 (.1) Potri.001G267900 [exp] 308 / 3e-103 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G062300 [exp] 307 / 3e-103 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.010G129000 [exp] 292 / 6e-98 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 280 / 4e-93 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.019G085400 [exp] 112 / 3e-27 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004887 pacid=23157149 polypeptide=Lus10004887 locus=Lus10004887.g ID=Lus10004887.BGIv1.0 annot-version=v1.0 ATGGGACTAAGAGACTTGTATCATCTAACACAAACACCTAATTCAACTCATCCTCCAACTTTCATAGAATGGCTCAAGCCATCTTCTTCGATTTCGGATC ACAAGCATCCGCCTTTCCTAGGTCATCAACAAGTTCGTGATCATCATCACCTCATGGCCATCTACCTTCAAAAGGAGGAGGATGATCAGGAAGAAGAAGC ATCCACCAAGTGTCTACCACTGCTGAGCAAGCTCATGAGCACCCAAGAGCACCACAAAGATCGCAACTTTAAGATCAGGGATGACCCGATCAAAGAAGGG GTAGATCAGGAATCAGAAGCTGAAGCTGAAGATATAGAGGTAACGAGTTCGATTCCTGCTGCCAGTCCTACTAACAACTATAGTAGTAGCAACAACAGTA CTTCTAGTACAAGTGTTGAAGTGAAGCAAGAGGTGAAGATGTTTGATGATGAGGAAGTCAATGTGGCTTTGCACATTGGGTTGCCTAACAAGAACAACAA GGTGCTTGAGTTGAAGGAGCCTAAGATGGTCAAGTATGGTGGCAATTGGGAAAGGAAGAGCTCAATCAACAGAGAGAATAGGTTTTGGATCCCAACTCCA GCTCAGATTCTTGTTGGACCTATGCAATTTGCTTGTTCAATTTGTAGCAAGACTTTCAATAGGTACAACAATATGCAGATGCATATGTGGGGCCATGGGT CCGAGTTTAGGAAGGGTCCCGACTCTCTGAAGGGAACCCAACCGGCTGCAATGTTGAGGCTTCCGTGTTATTGTTGCGCTCAGGGTTGCAAGAACAACAT AAACCACCCGCGAGCCAAGCCATTGAAGGACTTTCGGACCCTTCAAACTCATTACAAGAGGAAGCACGGCTCCAAGGCCTTTAGCTGTCGAAAATGCGGT AAGACTTTTGCGGTCAAGGGAGACTGGAGGACCCACGAGAAGAATTGTGGGAAGCTATGGTATTGTACTTGTGGGTCTGATTTTAAACACAAGAGATCCT TGAAGGACCACATAAGGTCCTTCGGAAAGGGTCATTCTCCCCACCCTTCGCTCGAAGGGTTCGAGGATGAGAAGGAGTGTGTAACGAGTACTGGATCAGA CAACGATTTTACATGCAGCTGA
AA sequence Show only first row Show all	>Lus10004887 pacid=23157149 polypeptide=Lus10004887 locus=Lus10004887.g ID=Lus10004887.BGIv1.0 annot-version=v1.0 MGLRDLYHLTQTPNSTHPPTFIEWLKPSSSISDHKHPPFLGHQQVRDHHHLMAIYLQKEEDDQEEEASTKCLPLLSKLMSTQEHHKDRNFKIRDDPIKEG VDQESEAEAEDIEVTSSIPAASPTNNYSSSNNSTSSTSVEVKQEVKMFDDEEVNVALHIGLPNKNNKVLELKEPKMVKYGGNWERKSSINRENRFWIPTP AQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKAFSCRKCG KTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFEDEKECVTSTGSDNDFTCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	0	1
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10037737 [exp]	1.4	0.9791
AT1G68585			unknown protein		Lus10035025 [exp]	2.0	0.9772
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	2.4	0.9784
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	3.2	0.9790
AT3G25290			Auxin-responsive family protei...		Lus10025878 [exp]	3.7	0.9526
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	3.9	0.9713
AT3G59310			Eukaryotic protein of unknown ...		Lus10025530 [exp]	6.0	0.9600
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10040212 [exp]	8.1	0.9485
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10024497 [exp]	8.5	0.9633
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038398 [exp]	8.7	0.9483

Compare expression of checked genes

Lus10004887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.