Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51200 54 / 5e-10 A20/AN1-like zinc finger family protein (.1.2.3.4) AT3G52800 52 / 4e-09 A20/AN1-like zinc finger family protein (.1) AT2G36320 52 / 4e-09 A20/AN1-like zinc finger family protein (.1) AT2G27580 50 / 2e-08 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 47 / 2e-07 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT1G12440 46 / 4e-07 A20/AN1-like zinc finger family protein (.1.2) AT4G22820 46 / 5e-07 A20/AN1-like zinc finger family protein (.1.2) AT3G12630 45 / 1e-06 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT4G25380 40 / 6e-05 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020594 [exp] 90 / 1e-23 AT2G36320 149 / 2e-46 A20/AN1-like zinc finger family protein (.1) Lus10035603 [exp] 52 / 2e-09 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10003246 [exp] 52 / 5e-09 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10006671 [exp] 51 / 6e-09 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10031833 [exp] 50 / 2e-08 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10028903 [exp] 49 / 4e-08 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 49 / 5e-08 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10015697 [exp] 47 / 2e-07 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10031262 [exp] 47 / 4e-07 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184300 [exp] 54 / 4e-10 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 54 / 6e-10 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.001G018600 [exp] 52 / 2e-09 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G205500 [exp] 50 / 2e-08 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G117100 [exp] 50 / 2e-08 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.001G269400 [exp] 49 / 4e-08 AT3G12630 160 / 2e-50 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Potri.001G115000 [exp] 49 / 7e-08 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.006G056500 [exp] 47 / 1e-07 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.009G063900 [exp] 47 / 2e-07 AT3G12630 166 / 5e-53 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Potri.016G051700 [exp] 47 / 3e-07 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004889 pacid=23157155 polypeptide=Lus10004889 locus=Lus10004889.g ID=Lus10004889.BGIv1.0 annot-version=v1.0 ATGGAGGTGGTGGTTGCGGCGGCGGTGGTTGCGGTTGCGGCTCCGGAGGTTGATATGGAGAAGAAGGATGTGTCGGTGGGGACGCAGCCCAACAGGTGCA CCCAGTGCAATCGGCGCGTGGGGCTGACGGGGTTCAAGTGCAAGTGCGGGATGGTTTTCTGTGGCGGCGTGCGCACGGCGGGTGGTGCTGACGTGGTTCA AGGGCAAGTGCGGGATGGTTTTCTGTGGCGGCCACCGGTACCCGGAGCTGCACGGGTGCAGCTTCGATTTCAAGACGTTGGGGAAGGAACAGATCGCCAA GGAGAATCCGGTCGTCAAGGGGAAAAAGCTACGAAAGATCTGACGAGCTGA
AA sequence Show only first row Show all	>Lus10004889 pacid=23157155 polypeptide=Lus10004889 locus=Lus10004889.g ID=Lus10004889.BGIv1.0 annot-version=v1.0 MEVVVAAAVVAVAAPEVDMEKKDVSVGTQPNRCTQCNRRVGLTGFKCKCGMVFCGGVRTAGGADVVQGQVRDGFLWRPPVPGAARVQLRFQDVGEGTDRQ GESGRQGEKATKDLTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51200			A20/AN1-like zinc finger famil...		Lus10004889 [exp]	0	1
AT5G01710			methyltransferases (.1)		Lus10022682 [exp]	1.0	0.9150
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	2.6	0.8831
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	3.2	0.9110
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	5.9	0.8964
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	6.3	0.9020
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	7.3	0.8610
AT3G57450			unknown protein		Lus10031071 [exp]	9.5	0.8901
AT3G15040			Protein of unknown function, D...		Lus10034190 [exp]	12.3	0.8823
AT1G35830			VQ motif-containing protein (....		Lus10024738 [exp]	14.3	0.8754
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10020077 [exp]	14.5	0.8682

Compare expression of checked genes

Lus10004889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.