Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27590 483 / 1e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020593 [exp] 516 / 0 AT2G27590 385 / 3e-134 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184400 [exp] 530 / 0 AT2G27590 490 / 5e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004890 pacid=23157180 polypeptide=Lus10004890 locus=Lus10004890.g ID=Lus10004890.BGIv1.0 annot-version=v1.0 ATGGGAAAAAACAAAGAGAAGAAACACAGGCGAGCTGTCCCAAGGGAAGCTTCGTACTACTACGCCGACGACTATGCCAACGGCGGAGGAGAACAGAACG ACGCCGTACCACCACAGAGCGCTATTGCTTCTTCTGATCAAGAAGACGACTTCCCAGAAGGCGAAGAAGCAAGCTCATCATCCGATATTCCTTCCAAGTT TCTCCTCTATCAGCAGTCGTCACCCAAAGGAGATATAAGCTATTTGCAGAAGTTCTTTCTGATGTATGTGGGCGGGAGGGTTCCTCTCCATTTCCAGGAA GATTTCTGTGGCACTGCTCTGCTAAGTACTGAATGGCTCAGGGGAGACTCGAGAAGGACTTCTGTAGGAGTGGATTTCGACCTTGAAGCGCTGAACTGGT GCATGGATAACAACCTGAACAAATTCGGGTCAGATGGATACTCCAGAATATCCTTGTTCCACGGGAATGTCTTGCAGCCTCTCGAGGCGAAACTGTTGAG GGCCAGCAAATCCGAAGAGCTGATTCATAGCATTAAGCTCGAAGAACAAGAAGAAGAGGATGAAGAAGAGAGTATAGAGAATCCAGATTTAGATTCACCG ACTTCTCCCGGTGACAAGTACCTGAAGAGAAACTGTCTACTACCGGCGAGAGACATCGTGTGTGCTTTTAACTTCAGCTGCTGTTGTCTCCACAAACGGG CAGAACTCGTGCTGTATTTCAAGAACGTTCTCGACTGCTTGTCGAAGAAAGGCGGGATCTTCGCGATGGATCTGTACGGAGGTACTTCGAGTGAGCAGAA GCTAAGGCTTCAGAGACGGTTTCCGAATTTCACGTACATGTGGGAGCAAGACGAATTTGACATAGTCGCTCGCAAAACGAGAATCAGCCTCCATTTCCAT CTGCACAAGCAGCAGAGGAAGCTCCGGCATGCATTTTCATACAGCTGGAGGCTATGGTCACTGCCAGAAATCAAAGACTGCTTAGAGGAGGCAGGGTTCC AGTCCGTCCACTTCTGGCTTCGCAAGATGCCGGATGTCGAGGAAAGCAGGAGCACCGAAGGGTTTGGTGCTGGACGAGACATTAAGTACGAGGAGGTCAA GAAGTTCGAGCAAGAGGATTCCTGGAACGCTTATATTGTCGCTGTTGCAAACTCGAGCTAG
AA sequence Show only first row Show all	>Lus10004890 pacid=23157180 polypeptide=Lus10004890 locus=Lus10004890.g ID=Lus10004890.BGIv1.0 annot-version=v1.0 MGKNKEKKHRRAVPREASYYYADDYANGGGEQNDAVPPQSAIASSDQEDDFPEGEEASSSSDIPSKFLLYQQSSPKGDISYLQKFFLMYVGGRVPLHFQE DFCGTALLSTEWLRGDSRRTSVGVDFDLEALNWCMDNNLNKFGSDGYSRISLFHGNVLQPLEAKLLRASKSEELIHSIKLEEQEEEDEEESIENPDLDSP TSPGDKYLKRNCLLPARDIVCAFNFSCCCLHKRAELVLYFKNVLDCLSKKGGIFAMDLYGGTSSEQKLRLQRRFPNFTYMWEQDEFDIVARKTRISLHFH LHKQQRKLRHAFSYSWRLWSLPEIKDCLEEAGFQSVHFWLRKMPDVEESRSTEGFGAGRDIKYEEVKKFEQEDSWNAYIVAVANSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10004890 [exp]	0	1
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10004366 [exp]	11.2	0.8210
AT1G51060		HTA10	histone H2A 10 (.1)		Lus10032464 [exp]	15.1	0.8279
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	19.5	0.8038
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	21.5	0.7900
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	28.1	0.8050
AT1G61570		TIM13	translocase of the inner mitoc...		Lus10017352 [exp]	28.6	0.7705
AT4G21110			G10 family protein (.1)		Lus10014385 [exp]	35.8	0.7790
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10002522 [exp]	39.9	0.7567
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10040855 [exp]	40.5	0.7772
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10026965 [exp]	40.6	0.7371

Compare expression of checked genes

Lus10004890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.