Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27610 998 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 553 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 551 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G13230 530 / 4e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 528 / 8e-176 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 529 / 1e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 525 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 528 / 3e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 520 / 7e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 518 / 2e-172 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013991 [exp] 585 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 581 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020588 [exp] 559 / 0 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 546 / 1e-179 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 532 / 4e-176 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 528 / 1e-174 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 522 / 6e-173 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 518 / 1e-171 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 511 / 5e-169 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184800 [exp] 1135 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 620 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 595 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 592 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 585 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 581 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 580 / 0 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 540 / 4e-180 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 538 / 4e-177 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 535 / 5e-177 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004892 pacid=23157182 polypeptide=Lus10004892 locus=Lus10004892.g ID=Lus10004892.BGIv1.0 annot-version=v1.0 ATGAGAAGTCAGACCCTTTCGAGAACAGTGAAAACCAACTTCATTGCTCGACGACATCAGGCCGGATTCGGATTCAGTGCATCGCATTTCCTCTCAGTGG CTTTAAAGAAGGATGAGCCTGACAATGCACACCACCTGTTCGACAAAAGTCCTGACCAGGGAAACTCGAATGATGCACACCAACTGTTTGACGAAAGTCC TGACCGGGCAGGAAATTCGAACCGCTTGCTTTTCGAGCGATCACGGAACAACAGACACTCCGACGTGATGAATCTCTTTGTGGGCATTCATCGCTCCGGA TTTCCAGTTGATGGATGTACAATTTCCTGTGTGTTCAAAGCCTGTGCATACTCGCTTGATCGAATACTTGGAGTCCAAATCCATGGCTACTCCACAAAGC ATGGACTTTTGGTAGATGTCAGCGTTGGAACTTCAATGGTTGACATGTACTTCAAGAATGGCAGAGTTGTTGAAGGAAGGAGATTCTTTGACGAAATGCA GTTTCGAAATGTGGTTTCCTGGACTTCGTTGCTCACCGGATATGCACAGAACGGATTGAAAACCGAGGTAGAAGAAATGTTCGTCGAAATGCTGAGAGAT GGCGTTCAACCAGGGCAGTACACATTCGCCACGATGATTGGAAGCTTGGGAAGAATGATTGAGAAAGGAATTCAAGTTCAAGCTGCAGCGATAAAGAACG GATTCCAGACAGCTGCACCGGTCTCGAATTCGTTAGTGAGCCTTTACTCGAAATCCGGGATGATTAAGGACGCTAGAGCTGTATTCGATCGAATTTTCGA TAGGACTGCCGTTAGCTGGAACAGTATGGTTGCTGGTTATGTAACCAACGGGTTCCAATTCGAATCTGTCGAGATTTTCCAGCGAATGAGGCTTACTGGT TTCAAGCCAACCAATTTGACTTATGCTGCTGTTATGAAACTGTGTACAGTGATTCAAGATTTGATCTTTGCCCAAGAGCTGCATTGTTTGGTTCTGAAAA GCGGGTTGGAGTTCGAACAGAATGTCCGGATTGCCCTCATGGTAGGTAACGGTAAGTGTAACGCGATGAACGATGCTTTCGAGATATTTTCTAGTACGAA TGAAGAAACTCATGATGTTGTATTATGGACTGCTATGATCAGTGGCTACTTACAGAATGGAAATGCAGAGAAAGCTGTGGATTTGTTTCGTCGTATGAAG AAAAAGGGAAGCGTTCATCCGAATGAGTTTACTTATTCGACAATTCTGACCGCTCAACCGTTCATTTCGCCGTATCAAGTACACGCACAAGCAATCAAAG GCAATGTGGAGAAATCTCCTACAGTAGGGACTGCATTGCTGGATGCCTATATCGGAATAAAAGAAGTCGAAGAAGCTTCGATGGTTTTCGACAGAATCGG TACGAAGGATATCGTGGCGTGGTCAGCTATGGTGGCTGGATATGCACAGGCAGGAGATACAGAGAAAGCTGTCAAGACATTCGTCGAAATGGCGAGGAAT GGAGTCAAGCCTAACGAGTATACGTTCTCGAGTGTCGTGAATTCTTGCGCTGCTGCAATGGCGCCGGTGCAGCAAGGGAAGCAGATCCACGGCTGGTCGA TAAAATCGAGAAAGAACGATGCTTTATGCGTGTGCAGCGCTCTGGTTACGATGTATGCCAAGACCGGAGACATCGAGAGCGCGAATTTAGTGTTCGTGAG GCAAAAGGAACGAGATTTGGTTTCGTGGAATTCGATGATTTCCGGGTATGCACAGCACGGAAATGCGAAGAAAGCGCTTGAGGTTTTCGAGGAAATGCAG GTTCGGAATGTGGAAATGGACGGTGTGACGTTCATTAGCGTGATATCGGCGTGCACGCACGCTGGACTGATCGAGGAAGGTCGAAGGTATTTCGACTCGA TGGTAAAGAATCACCGAATCGAGCCGACAATGGAGCATTATTCTTGTTTGGTGGATCTTTATGGTCGAGCTGGGAAGCTCGAAAAGGCAATGGATGTCGT AAAGGGGATGCCTTTCCCACCGGGGGCGACATTATGGAGGACGGTTCTCGGTGCGGCCCGTGTGCACCGGAATCTCGAGATAGGAGAACTCGCTGCGGAG AATCTTATATCGATCCAGCCAGAGGATTCTGCCGCGTACGTGCTTTTGTCTAATATGCACGCGGTGGCCGGGAACTGGAAGGAGAGAACTAAAGTAAGGA AGTTGATGGATGTGAGGAATGTGAAGAAGGAAGCCGGGTACAGCTGGATCGAGGTGAAGAACACGACTCACTCGTTTTTAGCGGCTGATGTTTCGCACCC CATGTCGAGTTTGATATATGCAAAGCTTAAGGAGCTCGGTTCGAAGTTGAGAGATGCCGGGTATAGACCGGATACTGATAATGTGCTCCTTGATGTGGAT GATGAACATAAGGAATCGGTTCTTTCGCAGCATAGCGAGAGGCTGGCGATCGCGTTCGGGTTGATTTCGACACCGCAGGGGACTCCGCTGCGGATTATGA AGAATCTCAGGGTTTGTGGGGATTGTCATGCTGTGATTAAGTTGATCTCGGAAATAGAAGGGAGGTACATTGTTGTTAGGGATACTAATAGGTTCCATCA CTTCAAGGAGGGCTCTTGCTCTTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10004892 pacid=23157182 polypeptide=Lus10004892 locus=Lus10004892.g ID=Lus10004892.BGIv1.0 annot-version=v1.0 MRSQTLSRTVKTNFIARRHQAGFGFSASHFLSVALKKDEPDNAHHLFDKSPDQGNSNDAHQLFDESPDRAGNSNRLLFERSRNNRHSDVMNLFVGIHRSG FPVDGCTISCVFKACAYSLDRILGVQIHGYSTKHGLLVDVSVGTSMVDMYFKNGRVVEGRRFFDEMQFRNVVSWTSLLTGYAQNGLKTEVEEMFVEMLRD GVQPGQYTFATMIGSLGRMIEKGIQVQAAAIKNGFQTAAPVSNSLVSLYSKSGMIKDARAVFDRIFDRTAVSWNSMVAGYVTNGFQFESVEIFQRMRLTG FKPTNLTYAAVMKLCTVIQDLIFAQELHCLVLKSGLEFEQNVRIALMVGNGKCNAMNDAFEIFSSTNEETHDVVLWTAMISGYLQNGNAEKAVDLFRRMK KKGSVHPNEFTYSTILTAQPFISPYQVHAQAIKGNVEKSPTVGTALLDAYIGIKEVEEASMVFDRIGTKDIVAWSAMVAGYAQAGDTEKAVKTFVEMARN GVKPNEYTFSSVVNSCAAAMAPVQQGKQIHGWSIKSRKNDALCVCSALVTMYAKTGDIESANLVFVRQKERDLVSWNSMISGYAQHGNAKKALEVFEEMQ VRNVEMDGVTFISVISACTHAGLIEEGRRYFDSMVKNHRIEPTMEHYSCLVDLYGRAGKLEKAMDVVKGMPFPPGATLWRTVLGAARVHRNLEIGELAAE NLISIQPEDSAAYVLLSNMHAVAGNWKERTKVRKLMDVRNVKKEAGYSWIEVKNTTHSFLAADVSHPMSSLIYAKLKELGSKLRDAGYRPDTDNVLLDVD DEHKESVLSQHSERLAIAFGLISTPQGTPLRIMKNLRVCGDCHAVIKLISEIEGRYIVVRDTNRFHHFKEGSCSCGDYW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10004892 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10030549 [exp]	3.5	0.8280
AT1G07740			Tetratricopeptide repeat (TPR)...		Lus10005877 [exp]	5.8	0.8257
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	6.6	0.8070
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10013283 [exp]	8.8	0.7838
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	14.3	0.8124
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10030124 [exp]	18.0	0.7635
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	21.6	0.7697
AT4G37190			unknown protein		Lus10011023 [exp]	22.1	0.7401
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10016476 [exp]	22.4	0.7722
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	24.2	0.7796

Compare expression of checked genes

Lus10004892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.