Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44530 1356 / 0 HIRA homolog of histone chaperone HIRA (.1.2) AT5G64630 152 / 6e-39 MUB3.9, NFB1, NFB01, MUB3, FAS2 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT5G25150 83 / 6e-16 TAF5 TBP-associated factor 5 (.1) AT5G67320 71 / 2e-12 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 69 / 3e-12 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 71 / 4e-12 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 70 / 6e-12 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 68 / 9e-12 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G47410 70 / 1e-11 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT2G26060 67 / 2e-11 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020585 [exp] 1912 / 0 AT3G44530 1395 / 0.0 homolog of histone chaperone HIRA (.1.2) Lus10033489 [exp] 141 / 2e-35 AT5G64630 612 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10020888 [exp] 132 / 2e-31 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10024447 [exp] 90 / 4e-18 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 88 / 2e-17 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10006916 [exp] 79 / 1e-15 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 79 / 2e-15 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026837 [exp] 74 / 3e-13 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10020214 [exp] 74 / 4e-13 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G144800 [exp] 1546 / 0 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.004G184900 [exp] 1524 / 0 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.007G108200 [exp] 135 / 1e-33 AT5G64630 667 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.018G020200 [exp] 86 / 7e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 83 / 7e-16 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G050100 [exp] 79 / 6e-15 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 79 / 7e-15 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.013G079600 [exp] 79 / 2e-14 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.T125206 [exp] 76 / 9e-14 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G197900 [exp] 76 / 1e-13 AT5G13480 760 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF07569 [flax] [poplar] Hira TUP1-like enhancer of split
Representative CDS sequence Show only first row Show all	>Lus10004893 pacid=23157164 polypeptide=Lus10004893 locus=Lus10004893.g ID=Lus10004893.BGIv1.0 annot-version=v1.0 ATGATTGCTGAGAAACCCATCTGGGTTAAGCATGAAGGAATGCAGATTTTCTCCATCGATGTTCAGCCTGGTGGACTTCGGTTTGCTACTGGTGGAGGCG ACCATAAGGTCAGGATCTGGGACATGAAGTCAGTAAGCAAGAGCTTAGAAACCAGCGACACGTCAAGGAGGCTCCTAGCAACGCTCCGCGATCATTTCGG TTCAGTGAACTGCGTAAGGTGGGCGAAGCATAGTCGTTACGTGGCATCCGGATCCGATGACCAGGTGATCTTAATCCACGAAAGGAAGCCCGGTTCAGGA ACCACAGAGTTTGGTAGTGGAGAGGCCCCCGATGTTGAGAACTGGAAAGTCGCAATGACTTTGAGAGGCCACAGCGCTGACGTGGTAGATCTTAACTGGT CACCAGATGACTCCATACTAGCTAGTGGAAGTTTGGACAACACCGTCCATGTTTGGAATATGAGCAATGGCATATGCACTGCTGTTCTTAGAGGCCACTC GAGCCTCGTTAAAGGAGTTACTTGGGATCCGATTGGCTCCTTCATCGCTAGTCAGTCCGATGACAAGACCGTGATTATCTGGAGAACAAGTGACTGGAGC TTGGCTCACCGAACAGACGGCCACTGGGCGAAATCACTTGGATCGACCTTTTTCCGGCGACTCGGATGGTCACCATGCGGCCATTTCATAACCACCACTC ACGGTTTTCAGAAGCCGAGGCATTCTGCTCCTGTTCTAGAGAGAGGAGACTGGGCTGCCACTTTCGACTTTCTTGGCCACAACGCTCCTATTATCGTCGT AAAGTTTAACCATTCGATGTTTAGAAGGAGTTCTCAGGAGGTGAAAACTAATGCGGTTGGTTGGTCGAACGGGTCGTCCAAGACTGCGAACAAAGAATCT CAGCCGTATAATGTCATCGCTATCGGTAGTCAGGATCGCACGATAACTGTTTGGACGACTGCAAGCCCTCGGCCTCTTTTCGTCGCCAAGCATTTCTTTA CGCAGAGTGTTGTCGACTTGTCTTGGAGCCCAGATGGATACTCGCTTTTCGCCTGTTCATTGGACGGATCGGTGGCTACTTTCCATTTCGATTCGAAAGA GCTCGGCCAAAAGCTGAGCGATACCGAACTCGACGAGTTAAAGAGGAGTCGTTACGGTGATGTCAAAGGTCGTCAGACAAACTTAGCAGAGAGTGCTCAG CAGTTGCTACTCGAGGCGGCCTCAGTTAAGCAAACAGCCACCAAAAAGACGGTCCACGACAATCAGAAGCCTTCAGCTGAAACGACAAAGATCTCTGAGC CACAGGTCGATAATGGGAAGGGCGGAGGGATCACGAATGATGGCTTGAACAAGGTTTCGACTTCCAATCGAGTAGTATCCAGTCCAGTGAAACAGAGAGA ATACAGGCGGCCTGATGGCAGGAAGCGAATTATTCCCGAAGCATTGGGCGTGCCAAGTCAGCAGAATACAGTGAAAGCTGCCGACTTCCCCCCTACAGCA TCTGACCACAGTAAGGAAGAGAACGGATTAGTTCCGATGGATGTTGGGATTCGAGAGGCCTCCATTAGAGGAACAGTTGGCCGGAGCTCTAATTTGAAGG AGCGTGGCGGGTTCACGGCTAGGGCGACCATTACGGACTGTTTGGTGATCGAAAAGGCTTTGGATCCTTCGGGTGGAGATGGGATTCTTACTATCGAGCA GTCTGGAAGTGTGAAAGCATCTAGCAGCTCGTCTAGTGCTATTGTCACTCCTCTTTCGATCAGGGTGTTTGATAAGAAAGTAGGGGAAGATACCGTACCG ATTTGCTTGGAAGCCCGCCCTAGAGATCGGTCTGTAAGTGATGTTCTTGGTGTGGGGAAGACGAGCATGATAAAGGAAACAGAGGTTTTGTGCACCAAAG GAGGGAATACCCTTTGGTCCGATCGGATATCTGGAAAAGTCACTGTTTTGGCTGGAAATGCTAACTTCTGGGCCGTCGGGTGTGAAGATGGTTCTCTACA GATCTACACAAAATGCGGGAGACGAGCGATGCCAACTATGATGACAGGATCAGCAGCAACCTTTGTGGACTGCGATGAGAATTGGAAACTACTGCTGGTA ACACAGAAGGGATCCTTATACTTATGGGATCTGTTTCGGCGTAACTGTCTTCTTCAGGACTCGTTAGCATCTCTAGTGGTGGCTTCAGATACCAAATCCT CCACAAAAGGCACAATCAAAGTTATATCGGCCAAGTTGTCGAAATCTGGTTCGCCTTTGGTTGTTCTCGACACTCGTCATGCCTTCCTCTTCGACACGAG TCTCAGGTGTTGGCTGAGGGTGGCTGACGATTGCTTTCCCACATCGAATTTTGCTAGTTCTTGGAATTTCGGTTCTGCTCATAGTGGTGAGCTTTCTGCA TTGCAAGTGGAAGTCCGGAAATATCTGGGTAGGAAGCCTAGTTGGAGCAGGGTTACAGATGACGGAATACAGACGCGTGCCCATTTGGAAGCGCAGTTAG CATCCAGTTTGGCTTTGAAGTCCCCGAATGAATACCGCCAGTGCCTTCTTTCGTACATACGCTTCCTAGCAAGAGAAGCAGATGAATCACGATTACGCGA AGTATGCGAAAGTTTCTTAGGACCTCCTACTGGCATGGCAGAACCAACAACTTCTTCAGATGCCAATAACTTGGCTTGGGATCCCTTTGTCCTTGGAATG AGGAAGCACAAGCTCTTACGAGAAGACATTCTCCCGGCAATGGCATCTAACCGGAAAGTCCAGCGGCTTCTCAATGAGTTCATGGATCTCCTGTCCGAAT ACGAATGTCCAGAGACTAATGCAGAACAGAAAAACATTGAACCACACGAGGCAACAACCGAAAAGATGGATATTGATCTTGATCATAATCCACCGGCATC GAATCACGAAACGAACTCTACCGTTCTGGCCACAGCTCAATTACTACTGGAGTCTGTAAAACCGGTAACTAACAATAAGGAACCTTTTCCGAATCCCGGG GATGATAAGGAGTGTAACCAGCCAGAAGCAGAGAAAGTAGATGATTCTGTACCCACAGACACTGATTTAGTAGCTGAAGATTCTCTTGCTGACTAA
AA sequence Show only first row Show all	>Lus10004893 pacid=23157164 polypeptide=Lus10004893 locus=Lus10004893.g ID=Lus10004893.BGIv1.0 annot-version=v1.0 MIAEKPIWVKHEGMQIFSIDVQPGGLRFATGGGDHKVRIWDMKSVSKSLETSDTSRRLLATLRDHFGSVNCVRWAKHSRYVASGSDDQVILIHERKPGSG TTEFGSGEAPDVENWKVAMTLRGHSADVVDLNWSPDDSILASGSLDNTVHVWNMSNGICTAVLRGHSSLVKGVTWDPIGSFIASQSDDKTVIIWRTSDWS LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGDWAATFDFLGHNAPIIVVKFNHSMFRRSSQEVKTNAVGWSNGSSKTANKES QPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGSVATFHFDSKELGQKLSDTELDELKRSRYGDVKGRQTNLAESAQ QLLLEAASVKQTATKKTVHDNQKPSAETTKISEPQVDNGKGGGITNDGLNKVSTSNRVVSSPVKQREYRRPDGRKRIIPEALGVPSQQNTVKAADFPPTA SDHSKEENGLVPMDVGIREASIRGTVGRSSNLKERGGFTARATITDCLVIEKALDPSGGDGILTIEQSGSVKASSSSSSAIVTPLSIRVFDKKVGEDTVP ICLEARPRDRSVSDVLGVGKTSMIKETEVLCTKGGNTLWSDRISGKVTVLAGNANFWAVGCEDGSLQIYTKCGRRAMPTMMTGSAATFVDCDENWKLLLV TQKGSLYLWDLFRRNCLLQDSLASLVVASDTKSSTKGTIKVISAKLSKSGSPLVVLDTRHAFLFDTSLRCWLRVADDCFPTSNFASSWNFGSAHSGELSA LQVEVRKYLGRKPSWSRVTDDGIQTRAHLEAQLASSLALKSPNEYRQCLLSYIRFLAREADESRLREVCESFLGPPTGMAEPTTSSDANNLAWDPFVLGM RKHKLLREDILPAMASNRKVQRLLNEFMDLLSEYECPETNAEQKNIEPHEATTEKMDIDLDHNPPASNHETNSTVLATAQLLLESVKPVTNNKEPFPNPG DDKECNQPEAEKVDDSVPTDTDLVAEDSLAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10004893 [exp]	0	1
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10029646 [exp]	1.7	0.9360
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10030444 [exp]	3.9	0.9209
AT3G23780		NRPE2, DMS2, DR...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10027166 [exp]	4.9	0.9223
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	5.2	0.9096
AT1G65440		GTB1	global transcription factor gr...		Lus10003130 [exp]	8.5	0.8989
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	9.3	0.8762
AT4G35730			Regulator of Vps4 activity in ...		Lus10028383 [exp]	9.4	0.9224
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10038007 [exp]	10.7	0.8907
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	11.8	0.8794
AT2G29210			splicing factor PWI domain-con...		Lus10004983 [exp]	13.6	0.8833

Compare expression of checked genes

Lus10004893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.