Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00120 345 / 4e-118 ATCG00120.1, ATPA ATP synthase subunit alpha (.1) ATMG01190 242 / 7e-78 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1) AT2G07698 241 / 2e-75 ATPase, F1 complex, alpha subunit protein (.1) AT1G20260 64 / 5e-12 ATPase, V1 complex, subunit B protein (.1) AT4G38510 64 / 5e-12 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G76030 64 / 5e-12 ATPase, V1 complex, subunit B protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027827 [exp] 66 / 1e-12 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10005057 [exp] 66 / 1e-12 AT4G38510 959 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10024002 [exp] 66 / 1e-12 AT4G38510 954 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Lus10025081 [exp] 49 / 6e-07 AT4G38510 842 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G138000 [exp] 342 / 4e-117 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1) Potri.007G062242 [exp] 245 / 3e-79 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1) Potri.012G059700 [exp] 97 / 3e-26 ATCG00120 125 / 1e-35 ATP synthase subunit alpha (.1) Potri.009G137800 [exp] 65 / 3e-12 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.004G177500 [exp] 64 / 9e-12 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00006 [flax] [poplar] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0023 [flax] [poplar] PF00306 [flax] [poplar] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004894 pacid=23178688 polypeptide=Lus10004894 locus=Lus10004894.g ID=Lus10004894.BGIv1.0 annot-version=v1.0 ATGTACCGTGAACGACACACTTTGATCATTTATGATGATCTCTCCAAACAAGCGCAGGCTTATCGTCAAGTGTCTCATTTATTACGACGATCACCCGACC GTGAAGATTATCCAGAAGATATTTTTTATTTGCATTCGCGCCTTTTGGAAAGAGCTGCTAAATTAAGTTCTCGCTCAGGTGAAGGAAGCATGACTACTTT ACCTATTGTCGAGACAAGATCAAGAGACATTTTGGCTTATATTCCTACTAATGTAATTTCTATTACAGATGGACAAATTTTTTTATCTGCCAATTTATTC AATGCTGAAATACGACAAGCTATTAATGTGGGTATTTCAGTTTTTCGAGTCGGATCCGCAACTCAAATTAAAGCTATGAAACAAGTAGCTTGTAAATTAA AGTTGGAATTGGCACAATTCGTAGAATTAGAAGCCTTTGTGCATTTCGCTTCAGATCTCGATAAAGGTACGGAGAATCAATTGGCAAGAGGGCGACGATT TTGTGAGTTGCTTAAACAATCTCAATCGTCGCCTCTCATGGTCGAGGAACAGATAATGACTAGTTTAACTAGAACGAATGGTTATCTTGATTCATTAGAA ATTGGACAAGTAAGGAAATTACTCGAGGACTAA
AA sequence Show only first row Show all	>Lus10004894 pacid=23178688 polypeptide=Lus10004894 locus=Lus10004894.g ID=Lus10004894.BGIv1.0 annot-version=v1.0 MYRERHTLIIYDDLSKQAQAYRQVSHLLRRSPDREDYPEDIFYLHSRLLERAAKLSSRSGEGSMTTLPIVETRSRDILAYIPTNVISITDGQIFLSANLF NAEIRQAINVGISVFRVGSATQIKAMKQVACKLKLELAQFVELEAFVHFASDLDKGTENQLARGRRFCELLKQSQSSPLMVEEQIMTSLTRTNGYLDSLE IGQVRKLLED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	0	1
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	1.7	0.9826
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	1.7	0.9907
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	2.4	0.9881
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	3.5	0.9705
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	4.9	0.9563
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	5.0	0.9612
					Lus10028567 [exp]	5.2	0.8998
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	5.9	0.9471
					Lus10040269 [exp]	7.4	0.8693
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	7.5	0.9000

Compare expression of checked genes

Lus10004894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.