Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00020 684 / 0 ATCG00020.1, PSBA photosystem II reaction center protein A (.1) ATCG00270 131 / 4e-35 ATCG00270.1, PSBD photosystem II reaction center protein D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G138300 [exp] 682 / 0 ATCG00020 684 / 0.0 photosystem II reaction center protein A (.1) Potri.005G154836 [exp] 602 / 0 ATCG00020 603 / 0.0 photosystem II reaction center protein A (.1) Potri.013G142201 [exp] 74 / 4e-15 ATCG00270 410 / 1e-145 photosystem II reaction center protein D (.1) Potri.008G207200 [exp] 52 / 1e-07 ATCG00270 434 / 1e-154 photosystem II reaction center protein D (.1) Potri.019G047540 [exp] 39 / 0.0003 ATCG00270 105 / 2e-29 photosystem II reaction center protein D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00124 [flax] [poplar] Photo_RC Photosynthetic reaction centre protein
Representative CDS sequence Show only first row Show all	>Lus10004895 pacid=23178690 polypeptide=Lus10004895 locus=Lus10004895.g ID=Lus10004895.BGIv1.0 annot-version=v1.0 ATGACTGCAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAACCGCCTTTACATTGGATGGTTTG GTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATAGCTTTCATTGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAACCTGT TTCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTACCCAATATGGGAAGCAGCA TCTGTTGATGAATGGTTATATAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA GTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAG CTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTA GGCGTAGCTGGAGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAACGAATCTGCTA ATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAA CTCTCGTTCTTTACATTTCTTCTTAGCAGCTTGGCCTGTAATAGGTATTTGGTTCACGGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAACGGGTTC AACTTCAATCAATCTGTAGTTGATAGTCAAGGTCGCGTAATTAACACTTGGGCTGATATTATTAACCGGGCTAACCTTGGTATGGAAGTTATGCATGAAC GTAATGCTCATAACTTCCCTCTAGACCTAGCTGCTGTCGAAGCTCCATCTTCAAATGGATAA
AA sequence Show only first row Show all	>Lus10004895 pacid=23178690 polypeptide=Lus10004895 locus=Lus10004895.g ID=Lus10004895.BGIv1.0 annot-version=v1.0 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAA SVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHML GVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFNLNGF NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSSNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00020		ATCG00020.1, PS...	photosystem II reaction center...		Lus10004895 [exp]	0	1
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10009204 [exp]	3.0	0.9736
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10004084 [exp]	4.2	0.9680
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10015033 [exp]	5.5	0.9625
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032543 [exp]	6.9	0.9028
ATMG00650		ATMG00650.1, NA...	NADH dehydrogenase subunit 4L ...		Lus10004838 [exp]	6.9	0.9601
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000460 [exp]	10.2	0.9478
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10009720 [exp]	11.2	0.9429
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000459 [exp]	13.9	0.9408
ATMG00080		ATMG00080.1, RP...	ribosomal protein L16 (.1)		Lus10004083 [exp]	14.2	0.9412
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10034346 [exp]	14.7	0.9082

Compare expression of checked genes

Lus10004895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.