Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21250 1602 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G59140 1122 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT1G04120 1036 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G60160 996 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G13080 994 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13090 972 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13100 961 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G60970 916 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G62700 909 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT2G47800 885 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027567 [exp] 1180 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 1177 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10022858 [exp] 1044 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10017548 [exp] 1023 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10042023 [exp] 961 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10024965 [exp] 959 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 954 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10011498 [exp] 912 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10013201 [exp] 884 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034700 [exp] 1850 / 0 AT3G21250 1773 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Potri.015G023800 [exp] 1173 / 0 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033500 [exp] 1148 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033600 [exp] 1131 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G135800 [exp] 1083 / 0 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.001G095600 [exp] 1079 / 0 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.002G255800 [exp] 1021 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.014G193400 [exp] 1012 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.001G362300 [exp] 987 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 981 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10004896 pacid=23178687 polypeptide=Lus10004896 locus=Lus10004896.g ID=Lus10004896.BGIv1.0 annot-version=v1.0 ATGGATGATGCTGAGGACATATCAGAGCCTTTGTTAGTCGACGACAAGGTTAAGAAGAATGAATCTAAAATGGGTCAAGCTAATTTCTTTGGCAAGATAA TATTCTCTTGGATCAATCCTTTGTTAACCTTAGGTTTCTTAAAACCTTTGAAACTTGAAGACATCCCTTGTTTGGTCTCCGAAGATGAAGCTGATAAATC TTACCAGAGATTTAAACATGCTTGGGAATCCCTTATGAGAGCCAAGGGTTCAAACCAATGCCATGGTAGCTGCAGGAACTTGGTGGTTTCAGCCATGTTC AAGGTGTTCTTCAAGGAGAACATCCTTGTTGCACTTCTTGCTTTGGTTAAGACACTTGCCACTGTGGTTCTCCCTCTCTTGCTTTATGCTTTCGTGAATT ATTCGAACCTCGAAGAGCAGAATCTGTATCAAGGCTTGTCTATAGTGGGTTGCTTAATCTTTGTCAAGTTAGTGGAGTCAATGTCTCAAAGGCATTGGTT CTTCCTAGCAAGGAGGTCTGGAATGAAGATGAGATCGGCCATGATGGTGGCTGTGTACGAGAAGCAGCTCAAGCTTTCGAGCTTGGGGAGGAGGAGACAT TCAACTGGAGAGATTTTCAACTACATTTCTGTTGATGCTTACAGAATGGGAGAGTTCCCATGGTGGCTTCACTCAACTTGGAGTTTAACTCTGCAACTCT TCCTGTCCATTGCTGTTCTGTTTGGGGTAGTTGGAGTTGGAGCTGTCACTGGATTAGTCCCTCTCGTCATATGTGGGTTTCTTAATATACCCTTTGCTAA GGCCCTCCAGAAATGTCAATCCCAATTCATGGTTGCTCAAGATGAGAGACTGAGAGCCACCTCTGAGATCCTGAACAGCATGAAGATCATAAAGTTGCAA TCTTGGGAAGACAAGTTCAAGAACTTGATCGAGTCCAAGAGAGACAAGGAGTTCAAGTGGCTTTCGGCGATTCAGCTGATGAAGCCTTTTGCAAGTGGAC TCTATTGGTTGTCTCCTACAATCATATCTACTGTTACATTCATAGGATGTGCAGTATTCAGAAGTGCCCCTCTGAATGCCAGCACCATCTTCACAGTTCT TGCAACTTTAAGAGGGATGGGAGAGCCTGTCAGAATGATCCCTGAGTGTATGTCTATTATGATTCAAGTTCAGGTCTCTTTCAACAGGATCAATGCGTTC CTGCTGGATCATGAACTCAACAATGAAAACAACCTCAGTAGAAATGAAAATGAAACTGAGACAGACGAGACTCCTAATTATGGAAGTGTCAAGATTGAAG ATGGTAAGTTCAGCTGGGACCCTGAATTGACATTGCCAACTTTGAGTAAGGTGAACTTGGGAATCCAACCTGGTCACAAGGTTGCAATTTGTGGACCAGT AGGAGGAGGAAAATCTTCACTCTTATATGCAATACTTGGGGAGATACCAAAAATCTTTGGAACGGTTGATGTATCAGGATCCATTGCCTATGTTTCTCAA ACTTCGTGGATCCAAAGTGGGACAGTACGCGAAAATGTTCTATATGGAAAGTCAATGAACAAGGCTAGATATGAGAAAGCCATAAAAGCATGTGCTTTAG ACAAAGACATTAACAGCTTCCCTCATGGAGATCTCACAGAAATAGGCCAAAGAGGACTTAACATGAGTGGTGGACAGAAGCAGAGAATCCAACTTGCTCG TGCTGTCTACAATGATGCCCATATCTATCTCCTTGATGATCCTTTTAGTGCTGTTGATGCACATACTGCTGTCATCCTCTTCAACGACTGCGTAATGACA GCTCTAGAGAAGAAGACTGTTATTTTAGTGACTCACCAAGTGGAGTTCCTCTCTTCAGTTGACAAAATCCTGGTGATGGAAGATGGCGAAATCACTCAAT CAGGAAGCTATGGGGAGCTATTGATGGCAGGAACAGCATTTGAGCAGCTTGTGAATGCTCATAAAGATTCAATAACAACATTAGGCTCTTCAACCAACCA ACTTGAGTCAGAAGACAAAAAAGTGGGTCAGAATGATGGTATTGAGGTGGAATTTCGAGAAACTGAGATGAGCAAGAAAGAAGTGATCACTGGATCCGTC CAACTGACAGAAGAAGAAGAGAAGGAGATTGGTGATGCTGGATTGAAGCCTTACTTTGATTACATCAGTGTCTCAAAAGGAACTCTACTTCTATCATTGG GTGTGATACTGCAGACTACCTTTTTCACTCTTCAGGTTGCTTCAAATTATTGGCTAGCATTCGCCATTGACATTCCTGGCATTGGGAATGGCTTCTTGAT AGGGATTTATGCTCTCATTTCAACATTGAGTGCCATTTTTGTCTACCTGAGGTCTCTAGCTACAGCACACTTGGGTCTGAGAGCTTCCAAGAGCTTCTTC TCTCGTTTTATCGATGCACTCTTCAAGGCTCCAATGTCCTTCTTTGACTCTACCCCGGTCGGAAGGATCCTCACTCGAGCATCTTCTGATATAAGCATTA TGGACTTTGATATTCCCTTCTCAATTCTGTTTGTTTTGGGGCCTCTCATAGAGCTACTGGCTATCATTGGAATAATGGCTTCAGTCACATGGCAAGTCCT CATTGTAGCCATTTTTGCACTCGTAGCTTCAAAATATGTTCAGGATTACTACGTAGCAACTGCTAGGGAATTAATACGGATCAATGGAACAACGAAAGCC CCCGTGATGAACCATGCATCAGAGACGTCACTTGGTGTTGTGACAATTAGAGCATTCAAAATGGTGGACAGGTTCTTCAGAAACTACATGAAACTAGTAG ACCAGGATGCCATGCTTTTCTTTCATACTAATGGAGTATTAGAATGGCTGGTTATACGCATAGAGGCACTTCAGAACTTAACATTGTTCACTGCTGCTCT ACTCCTTGTGTTGCTTCCAAAGGGAACCATAGCTCCAGGACTGGTTGGGCTTTCATTGTCATACGCGTTGTCACTCACCGGAACTCATGTGTTCATGATT CGCTGGCATTGCAACTTGGCTAACTACATTGTATCAGTTGAAAGGATCAAGCAGTACATGCACATTCAGCCTGAACCTCCGGCCATTATTCAGGACAAGA GGCCACCATCGTCATGGCCTCAAAACGGTAGAATAGAGCTTCAACAGCTTAAGGTTAGGTACCGCGCAAATGCTCCACTTGTGTTAAAAGGTATAAGCTG TACATTCAAGGAAGGGAGCAGAATAGGAGTCGTGGGGAGAACTGGAAGTGGGAAAACTACACTGATAAGCGCCTTGTTTCGACTAGTCGAGGCTGATAGT GGAAGGATTCTCATTGATGGAGTTGATATATGCACCATGGGGCTTAAGGATTTAAGGATGAAGTTAAGTGTGATCCCACAAGAGCCTACTCTTTTTAGAG GCAGTGTCAGGACTAACTTGGACCCTTTAGGCCTTTATACTGATGAGGAGATATGGGAGGCCTTGGATAAATGTCAGCTCAAGTCAACTATCACCACCCT ACCAAACTTGTTGGATTCATCAGTGAGTGATGAGGGTGAGAATTGGAGTGCTGGGCAAAGGCAACTGTTCTGCCTTGGGAGAGTCCTCTTAAGAAGAAAC AAAATTCTGGTGCTGGATGAAGCCACTGCATCTATTGATTCGGCCACTGATTCCATCCTACAGAAAATCATCAGGCAAGAGTTTGCAGAATGTACAGTGA TCACGGTTGCTCATCGGGTCCCAACTGTCATAGACAGTGACATGGTCATGGTCCTATCATATGGGAAATTGCTGGAGTATGATGAGCCCTCGAGGCTAAT GGAGACATCCAACTCATCATTCTCCAAACTGGTAGCTGAATATTGGTCTAGCTGTACAAGGAACTCCTCTCACAACTTTTAA
AA sequence Show only first row Show all	>Lus10004896 pacid=23178687 polypeptide=Lus10004896 locus=Lus10004896.g ID=Lus10004896.BGIv1.0 annot-version=v1.0 MDDAEDISEPLLVDDKVKKNESKMGQANFFGKIIFSWINPLLTLGFLKPLKLEDIPCLVSEDEADKSYQRFKHAWESLMRAKGSNQCHGSCRNLVVSAMF KVFFKENILVALLALVKTLATVVLPLLLYAFVNYSNLEEQNLYQGLSIVGCLIFVKLVESMSQRHWFFLARRSGMKMRSAMMVAVYEKQLKLSSLGRRRH STGEIFNYISVDAYRMGEFPWWLHSTWSLTLQLFLSIAVLFGVVGVGAVTGLVPLVICGFLNIPFAKALQKCQSQFMVAQDERLRATSEILNSMKIIKLQ SWEDKFKNLIESKRDKEFKWLSAIQLMKPFASGLYWLSPTIISTVTFIGCAVFRSAPLNASTIFTVLATLRGMGEPVRMIPECMSIMIQVQVSFNRINAF LLDHELNNENNLSRNENETETDETPNYGSVKIEDGKFSWDPELTLPTLSKVNLGIQPGHKVAICGPVGGGKSSLLYAILGEIPKIFGTVDVSGSIAYVSQ TSWIQSGTVRENVLYGKSMNKARYEKAIKACALDKDINSFPHGDLTEIGQRGLNMSGGQKQRIQLARAVYNDAHIYLLDDPFSAVDAHTAVILFNDCVMT ALEKKTVILVTHQVEFLSSVDKILVMEDGEITQSGSYGELLMAGTAFEQLVNAHKDSITTLGSSTNQLESEDKKVGQNDGIEVEFRETEMSKKEVITGSV QLTEEEEKEIGDAGLKPYFDYISVSKGTLLLSLGVILQTTFFTLQVASNYWLAFAIDIPGIGNGFLIGIYALISTLSAIFVYLRSLATAHLGLRASKSFF SRFIDALFKAPMSFFDSTPVGRILTRASSDISIMDFDIPFSILFVLGPLIELLAIIGIMASVTWQVLIVAIFALVASKYVQDYYVATARELIRINGTTKA PVMNHASETSLGVVTIRAFKMVDRFFRNYMKLVDQDAMLFFHTNGVLEWLVIRIEALQNLTLFTAALLLVLLPKGTIAPGLVGLSLSYALSLTGTHVFMI RWHCNLANYIVSVERIKQYMHIQPEPPAIIQDKRPPSSWPQNGRIELQQLKVRYRANAPLVLKGISCTFKEGSRIGVVGRTGSGKTTLISALFRLVEADS GRILIDGVDICTMGLKDLRMKLSVIPQEPTLFRGSVRTNLDPLGLYTDEEIWEALDKCQLKSTITTLPNLLDSSVSDEGENWSAGQRQLFCLGRVLLRRN KILVLDEATASIDSATDSILQKIIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLLEYDEPSRLMETSNSSFSKLVAEYWSSCTRNSSHNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21250		ATMRP6, ABCC8	ARABIDOPSIS THALIANA MULTIDRUG...		Lus10004896 [exp]	0	1
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10001306 [exp]	1.0	0.9081
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	3.5	0.9008
AT2G45900			Phosphatidylinositol N-acetygl...		Lus10028147 [exp]	4.2	0.9006
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10015013 [exp]	4.9	0.8301
AT2G40480			Plant protein of unknown funct...		Lus10034211 [exp]	6.0	0.8823
AT5G17910			unknown protein		Lus10009544 [exp]	6.0	0.8779
AT2G40820			unknown protein		Lus10038998 [exp]	7.5	0.8750
AT5G17910			unknown protein		Lus10020367 [exp]	8.1	0.8810
AT3G26935			DHHC-type zinc finger family p...		Lus10000146 [exp]	10.2	0.8583
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	11.2	0.8577

Compare expression of checked genes

Lus10004896 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.