Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 432 / 8e-150 MATE efflux family protein (.1) AT1G15150 416 / 2e-143 MATE efflux family protein (.1) AT1G15160 403 / 2e-138 MATE efflux family protein (.1) AT1G71140 400 / 2e-137 MATE efflux family protein (.1) AT1G15180 394 / 6e-135 MATE efflux family protein (.1.2) AT2G04080 359 / 3e-121 MATE efflux family protein (.1) AT2G04100 359 / 3e-121 MATE efflux family protein (.1) AT2G04070 357 / 1e-120 MATE efflux family protein (.1) AT2G04090 352 / 1e-118 MATE efflux family protein (.1) AT2G04050 352 / 2e-118 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018134 [exp] 629 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 628 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 539 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 539 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 531 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 496 / 4e-175 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 405 / 1e-138 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 391 / 9e-134 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 356 / 8e-120 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116900 [exp] 479 / 3e-168 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 468 / 9e-164 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 466 / 6e-163 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 396 / 7e-136 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 388 / 2e-132 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.004G094800 [exp] 370 / 4e-126 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.004G094900 [exp] 370 / 1e-125 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.019G075800 [exp] 368 / 1e-125 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.017G120500 [exp] 368 / 9e-125 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.017G120600 [exp] 364 / 3e-123 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10004899 pacid=23177766 polypeptide=Lus10004899 locus=Lus10004899.g ID=Lus10004899.BGIv1.0 annot-version=v1.0 ATGTCAAGTGCACTGGAAACTCTATGTGGGCAAGCCTATGGAGCTAAGCAGTACAAGAAACTTGCAACGCAAACTTACACCGCAATCTTCTGCCTATTAT TAGCCTGCATTCCCATTTCCTTGCTCTGGATCAACATGGAGAGCGTACTTGTTTTAGTTGGCCAAGATCCCACCATCTCACGTGAAGTTGGGAAGCTCCA GCTATGGCTGATCCCATCTCTATCCGCTTACGCAGTGGTCCAGCCGATCGTTCGATACCTCCAAGTACAAAGCTTGGTCCTCCCCATGCTAACAGCTGCT GTTATTTCAATTGCTTTCCATCTACCAGTATGCTGGTTTTTGGTGTTCAGGACTAGCCTGCGGGAAGTGGGGGCAGCATTGGCAATTGGCTTGTCGAATT GGTTGACCTTTGCTGCTCTTTCTGTTTATGTGAAGTACTCGCCTTCATGTGCCAAGACTAGGGCTCCTGTTTCTATGGATGTGTTCCGTGGTATTGGTGT GTTCTTCGGCTATGCCATCCCTTCCGCTGTGATGATCTGCTTAGAATGGTGGTCGTTTGAGCTTGTGGTGTTGCTTTCAGGTCTCCTACAAAATCCTGTG CTTGAAACATCAGTCCTATCGGTGTGTCTCAGCACCACTTCAACTTTCTATTCAATACCATCTGGACTTGGTGCTGCAGCTAGCACTAGGGTATCAAATG AGTTAGGAAGGGGGAGCCCAGAGGCAGCTCGAAGATCAGTAGGCTGTGTGATATCTATTGCAGCGTCTGAGGCACTATTACTGAGTGGTGCCCTCTTGCT ATGCCGTCATGTCTTTGGTTATAGCTTCAGCAATGACAAGGAAGTGGTTGAGTATGTCACCCAGATGGCTCCTCTGTTATGCTTGTCAGTGATTACGGAC AGTTTGCAAGGGGTTCTTTCAGGAATCGCAAGGGGGTGTGGATGGCAGCATATAGGAGCTTATGTTAACCTTGGAGCCTTTTATCTATGCGGCATTCCTG TAGGAGTTTTGTTGGGTTTCTTGACAGATCTAAGAGGGATGGGTCTTTGGATTGGAGTGCTAGTTGGTTCATTTTCACAAACATTACTTCTATTCCTTGT TACTGTTTGCACTAACTGGGAAAAACAGGTCTGCTAA
AA sequence Show only first row Show all	>Lus10004899 pacid=23177766 polypeptide=Lus10004899 locus=Lus10004899.g ID=Lus10004899.BGIv1.0 annot-version=v1.0 MSSALETLCGQAYGAKQYKKLATQTYTAIFCLLLACIPISLLWINMESVLVLVGQDPTISREVGKLQLWLIPSLSAYAVVQPIVRYLQVQSLVLPMLTAA VISIAFHLPVCWFLVFRTSLREVGAALAIGLSNWLTFAALSVYVKYSPSCAKTRAPVSMDVFRGIGVFFGYAIPSAVMICLEWWSFELVVLLSGLLQNPV LETSVLSVCLSTTSTFYSIPSGLGAAASTRVSNELGRGSPEAARRSVGCVISIAASEALLLSGALLLCRHVFGYSFSNDKEVVEYVTQMAPLLCLSVITD SLQGVLSGIARGCGWQHIGAYVNLGAFYLCGIPVGVLLGFLTDLRGMGLWIGVLVGSFSQTLLLFLVTVCTNWEKQVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15170			MATE efflux family protein (.1...		Lus10004899 [exp]	0	1
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10004031 [exp]	1.4	0.7280
AT5G50170			C2 calcium/lipid-binding and G...		Lus10015665 [exp]	2.0	0.7465
AT5G48385			FRIGIDA-like protein (.1)		Lus10009979 [exp]	12.4	0.6302
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Lus10028003 [exp]	12.5	0.6959
AT2G16250			Leucine-rich repeat protein ki...		Lus10010823 [exp]	13.3	0.6817
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009681 [exp]	17.5	0.5905
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10036588 [exp]	20.5	0.6286
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10015992 [exp]	21.5	0.5907
AT4G18540			unknown protein		Lus10008576 [exp]	24.2	0.6415
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	38.4	0.6371

Compare expression of checked genes

Lus10004899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.