Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05410 207 / 6e-63 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010550 [exp] 529 / 0 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10021915 [exp] 270 / 1e-86 AT1G05410 390 / 7e-132 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10041201 [exp] 199 / 9e-60 AT1G05410 325 / 4e-107 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086600 [exp] 238 / 5e-74 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004900 pacid=23177760 polypeptide=Lus10004900 locus=Lus10004900.g ID=Lus10004900.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAAGCAATGGAAATTGACGATGAGAGCAATGTAGATACCCTTGAAGCAAAGGAAATCAACTCCCGTCTGATGCCAGTTGGATATGATGTGG GTGGTGAAGGCCTTCCTTATGCTCCTGAAAATTGGCCTAATCTTGGACGTGGAGATGGGTCTCTTACTATTACTGGAAAGAACATTTATAATCATGGAAG CAGCTCCTATTCTGTGCCTCCTTTAGATTATCCCTCTGATCTATTGTCCAAAACCGGCTCATGTAAGGCTGGGAATACGATTTGCTGCAGTCTTGAAGAG TCCCTAGACAGTACACCTTTAGCTGCATTAGATTGTAATGTTTGCTGTACTGAGCCTCAGTTCTGCCGTCATTGTTGTTGTATTCTCTGTTCAAAAACTG TAGATCCATCACATGGAGGTTACAGTTACATTAAGTGTCAATCAGTGGTGACTGCATTCTTCATATGTGGCCATGTAGCCCACCTTGAGTGTGCTCTGGG AGTTTACATGGCAGGAACTGTTGGAGGAAGCATTGGTCTTGATGATCCATTGATTCTCGTTTGTATCTGCATTTTGCGCGGAACGGAAAAAGATAATGTC AGGGATTTGCTGAAACGCATTGAATCAGCTGTCAGGAAGCTTAAGCTTGGAACTACCCTGGAAGACATATGGAAAGCAGATAAGGATGCAGCAGCTGGCA ACATATTGGACAAAAAGCCAAGCCTATCAACTTTTGGATCCAAGCTACGTGATTACAATGACGAAATTCTCAAACTTGATGATGAGATCAATGATGTGCT CCGTTCACTAAGAAAGTCTCAGGAACTCGAGTATGGGATTGCAGAGGAACTACTTCATGCCCAGAAGAAAAACCTGCAAAAGCTCTACCATCAGCTTCAG AAAGAATATTCAGCCTTAGGATACCTCAAATCAGAGACAGCTAGAGATGGACTCCGGAATACGCTGGCTAGCAGGGTTGACATGATTGATTGGGAGCGGA GGAAACTGGCGCATATGAAAGAAGTGGCTAAGGGTTTTGGGATTGCACGGAATTTTTTCGGGTTGGAAGTTGAGAAACCAAGCAATGGAGAGCTCCTCTA G
AA sequence Show only first row Show all	>Lus10004900 pacid=23177760 polypeptide=Lus10004900 locus=Lus10004900.g ID=Lus10004900.BGIv1.0 annot-version=v1.0 MSKKAMEIDDESNVDTLEAKEINSRLMPVGYDVGGEGLPYAPENWPNLGRGDGSLTITGKNIYNHGSSSYSVPPLDYPSDLLSKTGSCKAGNTICCSLEE SLDSTPLAALDCNVCCTEPQFCRHCCCILCSKTVDPSHGGYSYIKCQSVVTAFFICGHVAHLECALGVYMAGTVGGSIGLDDPLILVCICILRGTEKDNV RDLLKRIESAVRKLKLGTTLEDIWKADKDAAAGNILDKKPSLSTFGSKLRDYNDEILKLDDEINDVLRSLRKSQELEYGIAEELLHAQKKNLQKLYHQLQ KEYSALGYLKSETARDGLRNTLASRVDMIDWERRKLAHMKEVAKGFGIARNFFGLEVEKPSNGELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05410			Protein of unknown function (D...		Lus10004900 [exp]	0	1
AT1G09050			unknown protein		Lus10037506 [exp]	3.2	0.9163
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	4.0	0.9247
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10010640 [exp]	5.3	0.9012
AT2G14255			Ankyrin repeat family protein ...		Lus10012455 [exp]	8.1	0.8892
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	8.7	0.8760
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	11.8	0.9116
AT2G14850			unknown protein		Lus10011422 [exp]	12.6	0.8742
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	16.4	0.9148
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	16.7	0.9126
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	17.5	0.8941

Compare expression of checked genes

Lus10004900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.