Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22530 161 / 1e-49 unknown protein AT4G14830 156 / 3e-48 HSP1 heat shock protein 20-like protein 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010549 [exp] 243 / 8e-82 AT3G22530 164 / 1e-51 unknown protein Lus10000009 [exp] 0 / 1 AT3G22530 59 / 6e-14 unknown protein Lus10035239 [exp] 0 / 1 AT3G22530 59 / 6e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G086400 [exp] 211 / 1e-68 AT3G22530 165 / 3e-51 unknown protein Potri.008G154100 [exp] 207 / 6e-68 AT3G22530 140 / 2e-42 unknown protein Potri.002G051100 [exp] 131 / 2e-38 AT3G22530 127 / 3e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004901 pacid=23177771 polypeptide=Lus10004901 locus=Lus10004901.g ID=Lus10004901.BGIv1.0 annot-version=v1.0 ATGTACGCTAATTCAATTCCCCCTTTGCGAATCAGAAATCTTCTTCTCACGACCGGTCCCCAGATTTCCCAATCTCGCATCGCGAAAGTTTCTCTTCTCC GTTTCTTCGTTATCGCCGCCCTATCCTTCTCCGTCTCCGGAGACGGCATCAACTGTAGTGTCCCAAGAGGCCGAGGAATAACCACCACCACCACCATGAA GGTTCATCCAATGCCCAAAAGGAGGAACAATGTCACAATCCGAGGAGACGGCGGTGGGGACTTGTCCTCCTCCGGCGGCGGTAACAAGAAGCTGAGGAGG CTGCCCCATATCTTCAATCGAGTGCTGGAACTGCCGTTCCGGTCGGATGCTGACGTGTCGGTGGAGGAAAGCACCGATTGCTTCCGGTTCGTGGCGGAGG CGGATGATGTAGGGGAAGTTAGGGCTCACACCATCGAAATCCATCCCGGGGTTACCAAAATCGTGATTCGACCCAACGGGTACTTCGAATTGCCGTCGTT GGATGATTTGGAGTTGGATATGTGGAGGTTCAGGCTTCCGGATTCGACCCGACCCGAGCTGGCCAGCGCTGTTTTCATGGATGGGGAGTTGATCGTGACG GTGCCCAAGGGAAATGAAGTCGAGGTTGAAGAAGGGAACGGTAATAATAATAATCGCAGGGAGTATAGAGGAGCTGGAGGTATGGGAAACAATAATAACA ATGCTAGACTTGTCCTTGTACAGTAA
AA sequence Show only first row Show all	>Lus10004901 pacid=23177771 polypeptide=Lus10004901 locus=Lus10004901.g ID=Lus10004901.BGIv1.0 annot-version=v1.0 MYANSIPPLRIRNLLLTTGPQISQSRIAKVSLLRFFVIAALSFSVSGDGINCSVPRGRGITTTTTMKVHPMPKRRNNVTIRGDGGGDLSSSGGGNKKLRR LPHIFNRVLELPFRSDADVSVEESTDCFRFVAEADDVGEVRAHTIEIHPGVTKIVIRPNGYFELPSLDDLELDMWRFRLPDSTRPELASAVFMDGELIVT VPKGNEVEVEEGNGNNNNRREYRGAGGMGNNNNNARLVLVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22530			unknown protein		Lus10004901 [exp]	0	1
AT5G43050		NPQ6	NONPHOTOCHEMICAL QUENCHING 6, ...		Lus10038888 [exp]	1.0	0.9164
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10020345 [exp]	2.4	0.9067
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10024657 [exp]	4.9	0.8928
AT1G01840			unknown protein		Lus10041376 [exp]	4.9	0.8706
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	6.0	0.8772
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037682 [exp]	6.3	0.8739
AT4G35870			early-responsive to dehydratio...		Lus10041862 [exp]	6.7	0.8685
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	8.1	0.8710
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10011128 [exp]	8.9	0.8625
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037520 [exp]	9.0	0.8735

Compare expression of checked genes

Lus10004901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.