Plant FIBer expression Database

Lus10004903 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010548
[exp]
107 / 5e-29 ND /
Lus10006109
[exp]
94 / 3e-23 AT1G54520 43 / 9e-05 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G049500
[exp]
40 / 0.0009 AT1G54520 343 / 1e-115 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07466 DUF1517 Protein of unknown function (DUF1517)
Representative CDS sequence
>Lus10004903 pacid=23177748 polypeptide=Lus10004903 locus=Lus10004903.g ID=Lus10004903.BGIv1.0 annot-version=v1.0
ATGGCTTCTGGATTTTCCTTAGATTCACATTTAGCCTTTGCTCTCGCCTTGACCATCTTGTTCAGCAATCCTAGCATGTCCTCTTCTTCTTCCGCACCAC
CGCCATTTCCAGACAGTGATTATGATGGGGCAACTCAAGTTGGTTGGAAAGTTGAATTCATTTGTTTTGCATCAATGTGTTTGTTTGCCATCATCGGCTG
CGTCTTCTTTGTTTGTGTGAGTATCTTCATCAAAAGAACTATTGTCATTGTTCAGGTTCTGCTATCTGCTAGAGCTGGCGATGTTGGGATTGTGCTCCAC
GACATTGCTAAAAGCAGTAAGCTGAAAGAATCAATGCTGAAAGAGACCGTTAACACGCTGCTGCGACACCAACAGAGCGTCATCTACGGCTCCACATCTG
TGAAACGTGGACAACTGGAAGAATTAGGGGGCAAACAAGTGAAGAAGCACGGTGGGAACGGCTGGGTCTTACTTGACAATCTTAAATATGTGCCTGAACG
TACTCCCAAACAGGCCAAGGATTATACTCTGGTGACCATCATGGCTACTACTGTTGGTGATTATCAAACACTTCCCACCATTGAGACAAGTGGGGACATG
AAACAAGTTCTCAATCTTTTGATTACCAAGATGCGGATTATTCATGATGAAGTGGTGTGGGCTTATATAGATCCTTTATCGATGGAGGGGTTGCTTCAGA
GTTGCCCTGATCTGGTTTCTATCCTAGCTTAA
AA sequence
>Lus10004903 pacid=23177748 polypeptide=Lus10004903 locus=Lus10004903.g ID=Lus10004903.BGIv1.0 annot-version=v1.0
MASGFSLDSHLAFALALTILFSNPSMSSSSSAPPPFPDSDYDGATQVGWKVEFICFASMCLFAIIGCVFFVCVSIFIKRTIVIVQVLLSARAGDVGIVLH
DIAKSSKLKESMLKETVNTLLRHQQSVIYGSTSVKRGQLEELGGKQVKKHGGNGWVLLDNLKYVPERTPKQAKDYTLVTIMATTVGDYQTLPTIETSGDM
KQVLNLLITKMRIIHDEVVWAYIDPLSMEGLLQSCPDLVSILA

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10004903
[exp]
0 1
AT4G23060 IQD22 IQ-domain 22 (.1) Lus10024498
[exp]
1.7 0.7991
AT1G06260 Cysteine proteinases superfami... Lus10017674
[exp]
6.6 0.7678
Lus10034269
[exp]
8.0 0.7469
AT4G00230 XSP1 xylem serine peptidase 1 (.1) Lus10004685
[exp]
14.5 0.7020
AT2G36110 Polynucleotidyl transferase, r... Lus10043049
[exp]
21.6 0.7434
AT4G36930 bHLH SPT, bHLH024 SPATULA, basic helix-loop-heli... Lus10041592
[exp]
24.8 0.6936
AT4G23060 IQD22 IQ-domain 22 (.1) Lus10017841
[exp]
25.3 0.7027
Lus10015131
[exp]
26.6 0.7604
Lus10007785
[exp]
42.8 0.6463
AT4G02610 Aldolase-type TIM barrel famil... Lus10024849
[exp]
45.0 0.6865

Lus10004903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.