Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22420 578 / 0 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT5G28080 571 / 0 WNK9 Protein kinase superfamily protein (.1.2) AT3G04910 507 / 1e-171 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT3G48260 480 / 1e-163 WNK3 with no lysine (K) kinase 3 (.1) AT3G18750 458 / 2e-154 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G49160 452 / 2e-152 WNK7 Protein kinase superfamily protein (.1.2) AT5G58350 452 / 3e-152 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT3G51630 448 / 6e-151 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G41990 408 / 5e-135 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT1G64630 397 / 3e-131 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010547 [exp] 1142 / 0 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 649 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10001789 [exp] 648 / 0 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10041947 [exp] 483 / 8e-164 AT3G48260 612 / 0.0 with no lysine (K) kinase 3 (.1) Lus10017957 [exp] 484 / 5e-159 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10042223 [exp] 452 / 1e-152 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10008590 [exp] 451 / 4e-152 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10014165 [exp] 452 / 1e-151 AT3G51630 609 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Lus10024192 [exp] 442 / 2e-149 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G152300 [exp] 701 / 0 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 698 / 0 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.013G036300 [exp] 630 / 0 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.005G049800 [exp] 625 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 484 / 2e-164 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.016G134600 [exp] 483 / 1e-163 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.015G084600 [exp] 481 / 3e-163 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G155100 [exp] 470 / 1e-158 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.019G128600 [exp] 459 / 3e-154 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.005G057300 [exp] 440 / 5e-146 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10004904 pacid=23177734 polypeptide=Lus10004904 locus=Lus10004904.g ID=Lus10004904.BGIv1.0 annot-version=v1.0 ATGGAGGATTCCTCAAGTAGCAGGCCAGAAATGGATTCAGACAACCCAGAAATGAGTCATCTTCAAAGGCATGAACTTGAATCCCCAGATCGTGTTCCTG AATTTGTGGAGGTTGATCCCAGTGGCAGATACCGCAGATACAATGAAATTCTGGGGAAAGGAGCTTCCAAGATAGTATACAAGGCGTTTGATGAATATGA AGGAATTGAAGTGGCGTGGAATCAGGTGAAGCTGACGGATTTCATGCAGAGCCCAGGGGATCTGGAGAGGCTCTACTGCGAAATTCACCTCCTCAAGACT CTGAAACACGACAACATCATGAAGTTCTACTCTTCTTGGGTTGATGTTCCTAGTAGAAACATTAATTTCGTCACTGAGATGTTCACCTCCGGCACTCTCA GACAGTATAGGCTAAAACACAAGAGGGTGAATATTAGAGCAGTGAAGCATTGGTGTAGGCAAATCCTGAAAGGCCTACTTTATCTCCACAGCCGTGACCC TCCCATTATCCACAGAGACCTTAAATGTGATAATATTTTTATCAATGGCAATCAAGGCCAGGTTAAGATTGGTGATCTTGGTCTTGCTGCAATCCTCAGG AAATCACATGCCGCCCGTTGTGTTGGAACTCCGGAGTTCATGGCTCCAGAGGTTTATGAAGAGGAATACAATGAGTTAGTGGACATATATTCATTTGGGA TGTGTGTGTTGGAGATGGTTACGTTTGAATACCCATACAGTGAATGCACCCACGCTGCTCAGATTTACAAGAGAGTTATGGCGGGAAAAAAGCCAGAAGC TTTATACCAAGTGAATGACCCAGAGATAAGGCAGTTTGTTGAAAAATGTTTGGCCACCGTGTCCAATAGACTCTCTGCTAGAGAGCTTTTATTGGATCCT TTCCTTCAGATTGATGATTATGGATATGACTCGAGGTCGTCTGACTACCATGGAAGCTTTATCAACGGCGATGGCCATTACCTTGGCTACGTTCACGAAT ACCCTCCTGTTGATCATGACAGTGAAATTGATCTTTATGCTTGTGAAGATGATAAGCATTTCACAGATGTTGAAATTGCAATTCAAGGTTGGAAGCGTGA TGATGAGGATGGCATCTTCTTAAGGCTCAAAGTTTCAGATACCCAAGGCCGAATCCGGAACATCTACTTCCCATTTGATGTTGAGAATGATACGGCTGTG AGTGTTGTGACAGAAATGGTATCTGAACTTGCCATTTCTGATGAAGATGCAATCAAGATAGCTGACATGATTGATGATGAGGTTGCCTCCTTAGTTCCGG AATGGAAGAAGGAATCGATAACAAATGGTTGTTCGAATGCCAACAACTCACAGCCACCTCCTCCTCCTTCTCCTCCTCTTGCTGCTCCTCATCCTCCTCG CCATCATAGGAGTGCATCGTTTCATGGCCGATTCGAGGAGATAACGTACCAAGTGGAAGGAGCAGAGAGAGACGGAAAACATGGTGCTCAAATACATGAA GAGCGGACCATAGAGATGGACAGTCCTGAAGAAGAAGGAGAAGTTGCTTGCAGTGCAAGAAACTCTATCTCGTCCAACCCTTCAATGTCGACTTCGTACT GGGAGGATTATGAGAACGAGATCAGGCATGAGCTGAGGTGGGTCAAGGCAAAGTTTGAGATGCAGTTAAGGGAAGTTAGAGACCAACAGCTTGGACACCA ACAACCCAGACCCGGAACACCCGCAAGAGACTCAAGTAAAGTGGAAAGCAAGAAAGATGCAAGTGTTGTAAAACTACCAAGGCTGACAAGAGATAACAGC AACAATCAACCGCGAATGCATAAGGAGAGCGGAGTGCAATCACTGAATCGAGCAGCTTCTTCTAAAAGCCGCAAGGAATTGAGCACGTCTGGCAGTTTCA AGAGTTTTGAGAGAATAGGGAGTGTTGCTGTAGGTACTTCAACTCTGTGCAAAGCAACTTTGGTACCAAAATCACTTCATAGAGCTGCTTCCCTTCCGGT TGATGCTGTAGATGTTTAA
AA sequence Show only first row Show all	>Lus10004904 pacid=23177734 polypeptide=Lus10004904 locus=Lus10004904.g ID=Lus10004904.BGIv1.0 annot-version=v1.0 MEDSSSSRPEMDSDNPEMSHLQRHELESPDRVPEFVEVDPSGRYRRYNEILGKGASKIVYKAFDEYEGIEVAWNQVKLTDFMQSPGDLERLYCEIHLLKT LKHDNIMKFYSSWVDVPSRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLLYLHSRDPPIIHRDLKCDNIFINGNQGQVKIGDLGLAAILR KSHAARCVGTPEFMAPEVYEEEYNELVDIYSFGMCVLEMVTFEYPYSECTHAAQIYKRVMAGKKPEALYQVNDPEIRQFVEKCLATVSNRLSARELLLDP FLQIDDYGYDSRSSDYHGSFINGDGHYLGYVHEYPPVDHDSEIDLYACEDDKHFTDVEIAIQGWKRDDEDGIFLRLKVSDTQGRIRNIYFPFDVENDTAV SVVTEMVSELAISDEDAIKIADMIDDEVASLVPEWKKESITNGCSNANNSQPPPPPSPPLAAPHPPRHHRSASFHGRFEEITYQVEGAERDGKHGAQIHE ERTIEMDSPEEEGEVACSARNSISSNPSMSTSYWEDYENEIRHELRWVKAKFEMQLREVRDQQLGHQQPRPGTPARDSSKVESKKDASVVKLPRLTRDNS NNQPRMHKESGVQSLNRAASSKSRKELSTSGSFKSFERIGSVAVGTSTLCKATLVPKSLHRAASLPVDAVDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	0	1
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	1.0	0.8589
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10033218 [exp]	2.8	0.8489
AT1G64620	DOF	AtDof1,8	Dof-type zinc finger DNA-bindi...		Lus10023032 [exp]	2.8	0.8588
AT1G79640			Protein kinase superfamily pro...		Lus10026108 [exp]	4.2	0.8501
AT4G01220		MGP4	male gametophyte defective 4, ...		Lus10012650 [exp]	6.3	0.8095
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Lus10011172 [exp]	11.7	0.7957
AT5G22930			Protein of unknown function (D...		Lus10021419 [exp]	13.4	0.7952
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10008592 [exp]	15.1	0.6752
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10033598 [exp]	16.7	0.8344
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	16.9	0.8262

Compare expression of checked genes

Lus10004904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.