Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72920 89 / 2e-19 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT1G72940 89 / 4e-19 Toll-Interleukin-Resistance (TIR) domain-containing protein (.1) AT1G72930 84 / 9e-19 TIR toll/interleukin-1 receptor-like (.1.2) AT5G46450 89 / 2e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G72950 87 / 3e-18 Disease resistance protein (TIR-NBS class) (.1) AT4G16950 87 / 2e-17 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72890 85 / 2e-17 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT5G36930 86 / 3e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46520 86 / 3e-17 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38850 85 / 4e-17 Disease resistance protein (TIR-NBS-LRR class) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010574 [exp] 225 / 2e-63 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004911 [exp] 206 / 9e-57 AT1G27170 387 / 5e-115 transmembrane receptors;ATP binding (.1.2) Lus10035674 [exp] 162 / 3e-42 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018308 [exp] 154 / 2e-39 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10020534 [exp] 154 / 2e-39 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020238 [exp] 149 / 6e-38 AT1G69550 391 / 7e-117 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10038482 [exp] 149 / 9e-38 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10008415 [exp] 135 / 3e-37 AT5G36930 137 / 5e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10004115 [exp] 146 / 1e-36 AT5G27970 689 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002428 [exp] 109 / 3e-25 AT5G36930 387 / 2e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 110 / 6e-25 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 110 / 6e-25 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 108 / 9e-25 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 108 / 1e-24 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 108 / 1e-24 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 108 / 2e-24 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 107 / 2e-24 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 107 / 4e-24 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 107 / 4e-24 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10004905 pacid=23177743 polypeptide=Lus10004905 locus=Lus10004905.g ID=Lus10004905.BGIv1.0 annot-version=v1.0 ATGACTCATCCCCAAGCCTCTTCCTCCAAATCTTGTTCCTCTACACCGTCTGATCATCATATGCCTCCACTTCCAGATGGAGAGTATGAGGTTTTCCTGA GCTTTTGTGGTCGTGACGTCCGCAATACCTTTGCTGACCATCTCTACAGGAGTTTGGTTCGTTCCAAGATTCGGACCTTTAGGGACGAGGAAGAGCTACT CAAAGGGGAGACAATTGCCCCTTTCTTAGTCCAAGCCATCTCTGAATCCAAAATTTGCATCCCAATCTTCACAGAAAACTATGCTTCTAGCAAATGGTGT TTGATGGAGCTGGCTGAGCTGGCTGAGATGATAGCTCCTTCCAAATATACGTTGGATTCATCTCGAATCTCATGCCCTCCAAGGAGAGGTTGGAAAGGAA TCAAGGAAGCTGGTAAGCTCAAGGTTTTGAAGTTACGACAATGTAGTTGGATGGCGGAGTTCCCAGATTTGGCTTCATGTGGAGGTCTAGAGGTACTACA ATTGTACTACCTGGGAATGAAAGGCCATCTAGACATTTGCAACTTCGGAAACCTAAAATCACTTGTGCTCAATGACACCAGACTAACAGAGCTGAGAGGT GACATTGGGTTGCTTCAGAATCTCCACGAGATTGTTCTACAGAATTTTCAATTTAGAGAAACTCCTTTTAGTATTAGTAAATTATCCTCTCTGGAAACCT TGAACTTGACTACAAGTCATAAGGTACCGATGAAGGTGAGAGAAGATATCCCCACGGGTTTAAAACATCTGTCTATCTCGTCGTGCCCAAATGATGTTAA CCTACTGCAGCTCCATCAATTACAGGAGCTACACTATTTAGGCTGCCCCGAGATTGAAATTCCAGCAGATTTGTGGAAACTGTTAAAGTTGGAGACTTTA ACTGTCAGCTGTTGTTCATCATCATCATCTCATACTACTCTAGGATTAGATCATCCTTCTCCTGCCCTCCCATCATCTCTAAAGCTACTGGATGTTAATT GTTGTTGGTTCTTGGAGACTCTGGCCAATTTGATAAATCTCAGTAATCTGACTGAACTGCGGCTGGAATACGTCAGTGTGCGCGAGATTCTTGGTCTGGG GGAGCTGAAAATGTTGGCCACTCTATACCTAAGGGACGTCGAGAATATGGAAAATCTGGAAGGACTTGAAACTCTTGTGCAGCTTACCGTATTGTTTGTG AAACATTGTGGCGTAGTGGGCAAGTTCCCAGATGTGGCGAATCTGACCAAGTTAAAAAGTCTTAGCATCATTGGTTGTGAGCATCTGACAGAAATCCAAG GTCTGTCAGGATTAAAGGAGTCCTTAACATTTTTGGAAATACATTCGTGTGATTGTTTAGCAAAGGTTGAAGGCCTTGAATCTCTCGAATCACTCGAGGT TTTATCACTGGTAATGTATGGGGATTTACAATTGCTACCACCGTCACTGTCCCAGTTTGGCAAAAAACTACAGAAGTTAACTTATAAGGATTTCTACACT CTTCATGACATGCCGCCCCAACTTCCAGATCTCCCTATCAATATCAAATTGTTAAAGATATGTGCAAGTCGATCGAGAAGTTGCCGGATCTGTGTAGGCT TACACATTTGGAGAAATTGA
AA sequence Show only first row Show all	>Lus10004905 pacid=23177743 polypeptide=Lus10004905 locus=Lus10004905.g ID=Lus10004905.BGIv1.0 annot-version=v1.0 MTHPQASSSKSCSSTPSDHHMPPLPDGEYEVFLSFCGRDVRNTFADHLYRSLVRSKIRTFRDEEELLKGETIAPFLVQAISESKICIPIFTENYASSKWC LMELAELAEMIAPSKYTLDSSRISCPPRRGWKGIKEAGKLKVLKLRQCSWMAEFPDLASCGGLEVLQLYYLGMKGHLDICNFGNLKSLVLNDTRLTELRG DIGLLQNLHEIVLQNFQFRETPFSISKLSSLETLNLTTSHKVPMKVREDIPTGLKHLSISSCPNDVNLLQLHQLQELHYLGCPEIEIPADLWKLLKLETL TVSCCSSSSSHTTLGLDHPSPALPSSLKLLDVNCCWFLETLANLINLSNLTELRLEYVSVREILGLGELKMLATLYLRDVENMENLEGLETLVQLTVLFV KHCGVVGKFPDVANLTKLKSLSIIGCEHLTEIQGLSGLKESLTFLEIHSCDCLAKVEGLESLESLEVLSLVMYGDLQLLPPSLSQFGKKLQKLTYKDFYT LHDMPPQLPDLPINIKLLKICASRSRSCRICVGLHIWRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10004905 [exp]	0	1
AT3G22520			unknown protein		Lus10006124 [exp]	7.7	0.8221
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	7.7	0.8316
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	11.7	0.8402
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	12.3	0.8538
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10014552 [exp]	12.4	0.8253
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	12.8	0.8386
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	14.5	0.8203
AT2G30160			Mitochondrial substrate carrie...		Lus10042258 [exp]	15.2	0.8268
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	15.3	0.8145
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	16.1	0.8299

Compare expression of checked genes

Lus10004905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.