Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79460 530 / 2e-178 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G02780 244 / 9e-70 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 177 / 6e-46 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT4G16740 108 / 1e-24 ATTPS03 terpene synthase 03 (.1.2) AT4G16730 107 / 4e-24 AtTPS02 terpene synthase 02 (.1) AT2G24210 104 / 5e-23 AtTPS10 terpene synthase 10 (.1) AT1G33750 97 / 2e-20 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 96 / 2e-20 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25810 96 / 4e-20 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 94 / 8e-20 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014673 [exp] 834 / 0 AT1G79460 650 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10029033 [exp] 819 / 0 AT1G79460 662 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 795 / 0 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006923 [exp] 778 / 0 AT1G79460 538 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034229 [exp] 743 / 0 AT1G79460 583 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10034232 [exp] 662 / 0 AT1G79460 569 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004443 [exp] 656 / 0 AT1G79460 564 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 591 / 0 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 452 / 9e-147 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G082700 [exp] 647 / 0 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 640 / 0 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 261 / 2e-75 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.005G210300 [exp] 232 / 3e-65 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.002G052100 [exp] 227 / 2e-63 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G119700 [exp] 146 / 2e-36 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.015G085500 [exp] 141 / 3e-35 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.017G041700 [exp] 135 / 3e-33 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.015G032100 [exp] 133 / 2e-32 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.007G118600 [exp] 128 / 8e-31 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10004906 pacid=23177745 polypeptide=Lus10004906 locus=Lus10004906.g ID=Lus10004906.BGIv1.0 annot-version=v1.0 ATGCTTCAGGCTTCATTCCTTTCATCCTCCTCACCTTCATCCTTCCCTGCAGCGGTACGGCGCAGTTGTGAAGGGAGTAGTAGCAGATTCAGAATCCCAG CAGTACTGACAAGCCCATCCTTAAGCTCGAGTGCTAATGCTGGCGAATCTGAAGTGGACAAAATGAAGAAAATGTTCGATAAGGTCGAACTTTCGACAAT GTCGACGTCTTCTCCGTACGACACGGCATGGGTAGCAATGGTGCCATCGTTAGTGTCTCCAGCTCCTTGTTTTCCAGACAGTGTGACTTGGATGTTAGAC AATCAGCAAAAGGATGGATCTTGGGGTTTCCCAGCTGACCCATTACATATGAAAGACACTCTTCTGTCGACTTTAGCTTGCGTTCTTGCTCTCCGACGAT GGGGCATTGGTGACCAACACATTCAAAATGCCCTTGGATTTATGGAGCGGAACGCGGCTTATCTCAACGTTTCAACCCAAGAAGCGCCCATTGGGTTTGA CGTAACATTTCCCGCCATGATTCAAACCGCCATTAAGGATTTCAATTTGAATCTCCCGCTCAAATCGGCCAACATAGACGCCATGATCCGCAACAGAGAA TCCATACTGAGGAGCTCGGCAGCAAACCTGCACTACTCTGAAGGGCGTAATGCCTACTTGGCCTACATCTCGGAAGGAATCGGAGACCTACAAGACTGGG AAGCCGCCATGAAATTCCAGAGGAAGAACGGCTCCCTCTTCAACTCTCCCTCCGCAACAGCTGCCGCTTGCATTCACCTTCAGGACCCCAGTTCCTTTCG CTACCTCCGGTCGATTAGCAGCGCTGGGGCAGTTCCAGTGATTTGTCCCCACTGGATTCAATCCCAGCTTTGCCTGATTGACGAGATTGACAAGTTGGGG ATTGGTCGCCATTTTCGAGAGGAAATTAAGCTGGCATTAGACGAGATCTACAGAAGCTGGGAGGGGGGAGATGAGGATATTTTCCAGGAATCCTCAACCT GCGCCATGGCGTTCCGAATTCTCCGCCTCAATGGATACCCTGTCTCTCCAGACGTGTTTGGTAGATTCACGGAAGATCGATTTTGGAATGATACAATGGA AGGGTATTTGAAAGATGAGAGAGCAGTGCTTGAATTACACAAAGCATCAAAGGTTAGTTATCCGGAAGAAGCCATTCTGGAACACCTACAGTCATGGACA ACTCAATCTTTGATGAAGCTACTGGAAGATCCACTAGAGAATAGATTTGGAGTCTCTAAATCCATTTCCTCACAGGTGCGTGAAGTTTTCAAGTACCCAT TCGAGGCGGATCTGGAGCGCCTAAGTCACAAAAGAAACATTGAACAATATAGTGTTGACGACATCAGGATGCTGAAATCGTCATTCAGGTCTTCGACTAT TGGGAACCAAACCTTGTTAAAACTAGCTGTAGAAGATTTCAACTTCTGCCAAACTTTCCACCAGAAAGAACTAGCTCAACTTATGAGGTGGCTTAAGGAA TACAAATTGGATGAGTTGAGGTTGGGAAAGGGAAAGATGGTATACTGTTGCCTCACCGCAGTAGCCACTATCTTTGATCATGAGCTCTCCCAAGCTCGCA TCTCATGTGTCAAACACGCTGTTATTGCCGCTCTTGTTGATGAAATTTATGATATGAATGGAACTCCAGAGGAACAACTTAACCTTATTCATCTTTTGGA GAGGCATGTAGACTTCGCTTCAGAACGAGTTCAGACACTGTATTGGGCACTCCACAATGCCATCTGTGAAACGACTGAAAATGCATTCACCTTGCAAGGA CGCAGCGTTATGGATCACATTGTGGAAATCTGGTTGGATTATTTGCGATGCCAACTGCGAGAATCGCAACGATCTGAAAATGATACGCCACCAACCCTAG AGGAGTACATGAGCAGCGGAAGCGTTACAGTTGGTCTAGGACCGATTATTCTGCCGGCCCTCTACTTGTTAGGACCGAAGCTTCCTGATGAAGTGGCCAG GGGTCCAGAAGTTGCCAACCTATTCAACACGATGAGTGCTTGCGGGCGTCTTTTGAATGATCGGGTATCAATAGATCTAGCTGTCTCTCCATTCCTCCAA TCCGCCGGTAGAGTTATCGATACTGCAGAAGAACTCCGGCAGTGGCTTGCAGAGCAAAGGAAAACACCGACAACTCTGAAAATTACCCCAACAGCACTTG AGGAGCGATCGAGACCTATCGACTGTTTGGGAAGAAAAGACGATGGGCCAGCGACTGGGGAATTGGAGTTGCTGTGGATTTCTCAAAGGTGCTAA
AA sequence Show only first row Show all	>Lus10004906 pacid=23177745 polypeptide=Lus10004906 locus=Lus10004906.g ID=Lus10004906.BGIv1.0 annot-version=v1.0 MLQASFLSSSSPSSFPAAVRRSCEGSSSRFRIPAVLTSPSLSSSANAGESEVDKMKKMFDKVELSTMSTSSPYDTAWVAMVPSLVSPAPCFPDSVTWMLD NQQKDGSWGFPADPLHMKDTLLSTLACVLALRRWGIGDQHIQNALGFMERNAAYLNVSTQEAPIGFDVTFPAMIQTAIKDFNLNLPLKSANIDAMIRNRE SILRSSAANLHYSEGRNAYLAYISEGIGDLQDWEAAMKFQRKNGSLFNSPSATAAACIHLQDPSSFRYLRSISSAGAVPVICPHWIQSQLCLIDEIDKLG IGRHFREEIKLALDEIYRSWEGGDEDIFQESSTCAMAFRILRLNGYPVSPDVFGRFTEDRFWNDTMEGYLKDERAVLELHKASKVSYPEEAILEHLQSWT TQSLMKLLEDPLENRFGVSKSISSQVREVFKYPFEADLERLSHKRNIEQYSVDDIRMLKSSFRSSTIGNQTLLKLAVEDFNFCQTFHQKELAQLMRWLKE YKLDELRLGKGKMVYCCLTAVATIFDHELSQARISCVKHAVIAALVDEIYDMNGTPEEQLNLIHLLERHVDFASERVQTLYWALHNAICETTENAFTLQG RSVMDHIVEIWLDYLRCQLRESQRSENDTPPTLEEYMSSGSVTVGLGPIILPALYLLGPKLPDEVARGPEVANLFNTMSACGRLLNDRVSIDLAVSPFLQ SAGRVIDTAEELRQWLAEQRKTPTTLKITPTALEERSRPIDCLGRKDDGPATGELELLWISQRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004906 [exp]	0	1
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10018143 [exp]	3.5	0.8674
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	5.7	0.8491
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019728 [exp]	11.2	0.8655
AT1G14550			Peroxidase superfamily protein...		Lus10009899 [exp]	11.7	0.8557
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10013327 [exp]	13.3	0.8645
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10007326 [exp]	15.9	0.8484
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	21.4	0.9018
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	37.8	0.8509
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Lus10034245 [exp]	41.8	0.8484
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041828 [exp]	50.8	0.8427

Compare expression of checked genes

Lus10004906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.