Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26330 313 / 6e-102 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26320 310 / 8e-101 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26210 310 / 2e-100 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) AT3G26300 308 / 8e-100 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT1G13110 306 / 4e-99 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT1G13080 302 / 2e-97 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT5G25120 298 / 5e-96 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26310 298 / 7e-96 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT1G13090 297 / 9e-96 CYP71B28 "cytochrome P450, family 71, subfamily B, polypeptide 28", cytochrome P450, family 71, subfamily B, polypeptide 28 (.1) AT5G25140 296 / 2e-95 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010545 [exp] 777 / 0 AT3G26330 321 / 8e-105 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10016601 [exp] 604 / 0 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10029035 [exp] 416 / 8e-142 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10009903 [exp] 412 / 4e-140 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10034230 [exp] 410 / 2e-139 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030924 [exp] 401 / 6e-136 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016599 [exp] 398 / 1e-134 AT3G26330 395 / 7e-133 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10040120 [exp] 398 / 1e-134 AT3G48280 377 / 5e-126 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030708 [exp] 391 / 5e-132 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G223500 [exp] 446 / 9e-154 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 431 / 1e-147 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 431 / 1e-147 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 429 / 3e-147 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 412 / 2e-140 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 411 / 3e-140 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 408 / 7e-139 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 386 / 3e-130 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365300 [exp] 371 / 2e-125 AT3G26300 291 / 7e-94 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 373 / 4e-125 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10004907 pacid=23177761 polypeptide=Lus10004907 locus=Lus10004907.g ID=Lus10004907.BGIv1.0 annot-version=v1.0 ATGGAGATTAACAAAGTCACACGGTGCCAAGTTGTGTGGGTAGCACGACACAATCCAGCCAGCGCGATGTTGTGTATGGCCTGCAGCAGCTCCGCCGCCG CCTGGTCCATCAAAACTCCCCATAATCGGAAACCTCCACCAGCTCGCCGGCTCCCCTCCGACGTCGTTTTCTCCCAGCGGCCCCGCCTGGTCGCCGCCGC CATCTTCAGCTACAATTACAACGACATCGTATTCGCACCTTACGGAGCTTACTGGAGGCAGCTCCGCAAGATCTGCGTCCTCGAGATACTGAGCGTCAAG CGCGTCCAATCGTTCCGGTCCGTGAGGGAGGAAGCCACCTCCAATGCGGTGGCCCGGATCTCTGCTTCCGGCGCCGACCAGGTGTTCAATTTCAGCAGGA TGATCGTCTCCATGACTCTCGGGATCTCTGCCACCGTTACTTTCGGGAAAGATTATAAAGGGCAGGACGAATTTATCCCTGTGGTGGAGGAAATTACAAA GTTGCTGGGTGGGTTCTCCCTGGCGGATCTGTTTCCTAATTCCCTGAGATTGCTGGAGGTTTTCAGCGGGCTGAGGTGGAAGCTCCTCAAGCTGCGAGGC GAAATTGACAGGATGTTGGAGAGTATAATTAAGGATCACCGGAGCAGGGGAATTATTAAGAACCGAGATGGAGTTGATGATTTAGTTGATGTTCTTTTAA GGCTTCAGAATGGTGGCGATCTTGACTTTCCCATCACTGATATCAACATCAAAGCCGTCATTCTGGACATTTTTGTTGCCGGAAGTGAGACATCGTCGAC GGTTGTGAACTGGACGATGTGCGAAATGCTTAAGAACCCAAGAGTTCTCCAGAAAGCACAAGAAGAGATAAGGAGAGTGTTCGATGCGAAACGAGACGTC GACGAAACGTTGCTTCATGAGCTGCACTATTTGAAACTGGTGATTAAAGAGACAATGAGGCTACACACTCCTGCTCCACTGTTGCTGCCCAGGGAATGCA CTGAAGACTGCGAGGTTAATGGGTTTCAGGTGAAGGCAAAGACCAAGGTGATCGTTAACGCCTGGGCCATATCCAGGGATCCAAAGTATTGGGAGAACCC AGATGAGTTTTTCCCCGAAAGATTTATAGACAATTCGATTGATTTCAAAGGCTTAAACTTTGAGTTCTTACCATTCGGTGCTGGGAGAAGAATGTGCGCC GGGATGGCCTTCGGCTTGGCTAATGTTGAGCTGCCATTGGCCAAGTTCCTGTACCATTTTGACTGGAAGCTCCCCGACGGTGAAATTTTGGACATGGCGG AAACGAATGGAGCAACAGTTGCTTTGAAAAACGACCTCATGTTGATTCCCACTCCTTATCAGGCGCCAGAGTAA
AA sequence Show only first row Show all	>Lus10004907 pacid=23177761 polypeptide=Lus10004907 locus=Lus10004907.g ID=Lus10004907.BGIv1.0 annot-version=v1.0 MEINKVTRCQVVWVARHNPASAMLCMACSSSAAAWSIKTPHNRKPPPARRLPSDVVFSQRPRLVAAAIFSYNYNDIVFAPYGAYWRQLRKICVLEILSVK RVQSFRSVREEATSNAVARISASGADQVFNFSRMIVSMTLGISATVTFGKDYKGQDEFIPVVEEITKLLGGFSLADLFPNSLRLLEVFSGLRWKLLKLRG EIDRMLESIIKDHRSRGIIKNRDGVDDLVDVLLRLQNGGDLDFPITDINIKAVILDIFVAGSETSSTVVNWTMCEMLKNPRVLQKAQEEIRRVFDAKRDV DETLLHELHYLKLVIKETMRLHTPAPLLLPRECTEDCEVNGFQVKAKTKVIVNAWAISRDPKYWENPDEFFPERFIDNSIDFKGLNFEFLPFGAGRRMCA GMAFGLANVELPLAKFLYHFDWKLPDGEILDMAETNGATVALKNDLMLIPTPYQAPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10004907 [exp]	0	1
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10004908 [exp]	1.0	0.9954
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	6.6	0.9816
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	8.1	0.9790
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10034349 [exp]	9.9	0.9789
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10014284 [exp]	11.2	0.9718
					Lus10016839 [exp]	11.5	0.9744
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013595 [exp]	12.5	0.9802
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	13.8	0.9754
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028898 [exp]	14.0	0.9801
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Lus10023069 [exp]	16.2	0.9742

Compare expression of checked genes

Lus10004907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.