Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14930 363 / 2e-126 Survival protein SurE-like phosphatase/nucleotidase (.1) AT1G72880 193 / 1e-58 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008390 [exp] 191 / 3e-58 AT1G72880 526 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10015610 [exp] 187 / 8e-57 AT1G72880 522 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Lus10037627 [exp] 185 / 2e-55 AT1G72880 508 / 0.0 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G088000 [exp] 439 / 2e-156 AT4G14930 365 / 4e-127 Survival protein SurE-like phosphatase/nucleotidase (.1) Potri.010G088100 [exp] 414 / 1e-146 AT4G14930 355 / 5e-123 Survival protein SurE-like phosphatase/nucleotidase (.1) Potri.001G196800 [exp] 200 / 2e-61 AT1G72880 473 / 3e-167 Survival protein SurE-like phosphatase/nucleotidase (.1.2) Potri.003G041000 [exp] 197 / 2e-60 AT1G72880 480 / 4e-170 Survival protein SurE-like phosphatase/nucleotidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01975 [flax] [poplar] SurE Survival protein SurE
Representative CDS sequence Show only first row Show all	>Lus10004909 pacid=23177737 polypeptide=Lus10004909 locus=Lus10004909.g ID=Lus10004909.BGIv1.0 annot-version=v1.0 ATGGACAACTCCATTTCCGATCATCCCCTCCCGACTGTCATGGTCACCAACGACGACGGCATTGATGCACCTGGACTCCGATCCTTGGTCCGTGTCCTGG TCTCCACTCGTCGCTTCAACGTACTGGTCTGCGCTCCTGATTCAGAGAAATCCGCTGTCAGTCATAGTATTACTTGGCGGCATCCAATTTCAGCTCGGAA AGTCGCAATTGATGGAGCCACGGCGTACGCAGTTTCTGGAACGCCGGCTGATTGTACGTCTTTAGGAATCTCCAAAGCGCTCTTTCCTTCGGTTCCTGAT ATGGTAGTCAGTGGCATAAACATGGGGAGCAACTGTGGTTATCACATCGTCTACTCTGGGACAGTTGCTGGTGCTCGTGAGGCCTTCTTTAATGACATAC CTTCCATCTCAGTGTCTTATGACTGGGTTGGGGGTAAGAGCAGTGTCGAAGAATACACACTTGCTGCCGAGGCATGCATACCGATCATAACAGGCATACT TAGTGAAGCTAAAAACAAAAAGTATCCATCGGGGTGCTTCTTAAACATAGATTTGCCGACAAATGTTTCCCAGCATAAGGGGTATAAGCTCACAAGACAA AGTAAAAGCATATTTAGAATGGGATGGAAACAAGTTACTTCTGCAGCAGAAGGAGGGAAAATGATGTCCACGATGACAATGGATACCGATCCTGTGACAC AAACAGAGGTTAATGCATCAAATGCATCAGAAGGAGATCTCGTCTTTAAACGAGAAGTACGAGGAGCACAAATTATTGAAGATGATACTGACCACAAGTA TCTTAAAGATGGATATATTACTGTAACTCCACTTTCAGCCCTTTCCCCTGCCGACACAGGCTGCCATGCCTACTTCAAAAATTGGCTGCCGGGTGTGGTT GAACACGAATCCCCATCTGCCTTATAA
AA sequence Show only first row Show all	>Lus10004909 pacid=23177737 polypeptide=Lus10004909 locus=Lus10004909.g ID=Lus10004909.BGIv1.0 annot-version=v1.0 MDNSISDHPLPTVMVTNDDGIDAPGLRSLVRVLVSTRRFNVLVCAPDSEKSAVSHSITWRHPISARKVAIDGATAYAVSGTPADCTSLGISKALFPSVPD MVVSGINMGSNCGYHIVYSGTVAGAREAFFNDIPSISVSYDWVGGKSSVEEYTLAAEACIPIITGILSEAKNKKYPSGCFLNIDLPTNVSQHKGYKLTRQ SKSIFRMGWKQVTSAAEGGKMMSTMTMDTDPVTQTEVNASNASEGDLVFKREVRGAQIIEDDTDHKYLKDGYITVTPLSALSPADTGCHAYFKNWLPGVV EHESPSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14930			Survival protein SurE-like pho...		Lus10004909 [exp]	0	1
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Lus10003967 [exp]	2.2	0.8847
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10039861 [exp]	6.5	0.8197
AT3G22070			proline-rich family protein (....		Lus10039700 [exp]	7.3	0.8770
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	10.6	0.8639
AT2G25530			AFG1-like ATPase family protei...		Lus10002025 [exp]	11.3	0.8402
AT1G75140			unknown protein		Lus10010815 [exp]	12.0	0.8303
AT5G07590			Transducin/WD40 repeat-like su...		Lus10042992 [exp]	14.7	0.8190
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	15.9	0.8631
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	16.9	0.8526
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	18.5	0.8711

Compare expression of checked genes

Lus10004909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.