Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31710 735 / 0 Copper amine oxidase family protein (.1) AT1G31690 728 / 0 Copper amine oxidase family protein (.1) AT1G31670 679 / 0 Copper amine oxidase family protein (.1) AT4G14940 662 / 0 ATAO1 amine oxidase 1 (.1) AT1G62810 607 / 0 Copper amine oxidase family protein (.1) AT4G12290 598 / 0 Copper amine oxidase family protein (.1) AT3G43670 575 / 0 Copper amine oxidase family protein (.1) AT4G12280 334 / 3e-110 copper amine oxidase family protein (.1) AT2G42490 279 / 3e-83 Copper amine oxidase family protein (.1) AT4G12270 267 / 4e-82 Copper amine oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010542 [exp] 1226 / 0 AT1G31710 753 / 0.0 Copper amine oxidase family protein (.1) Lus10010540 [exp] 733 / 0 AT1G31710 761 / 0.0 Copper amine oxidase family protein (.1) Lus10026757 [exp] 694 / 0 AT1G31690 727 / 0.0 Copper amine oxidase family protein (.1) Lus10021922 [exp] 649 / 0 AT4G14940 839 / 0.0 amine oxidase 1 (.1) Lus10024571 [exp] 600 / 0 AT4G12290 993 / 0.0 Copper amine oxidase family protein (.1) Lus10032209 [exp] 595 / 0 AT4G12290 996 / 0.0 Copper amine oxidase family protein (.1) Lus10024568 [exp] 589 / 0 AT1G62810 914 / 0.0 Copper amine oxidase family protein (.1) Lus10013356 [exp] 479 / 7e-165 AT1G31690 499 / 5e-173 Copper amine oxidase family protein (.1) Lus10041208 [exp] 306 / 4e-97 AT1G31690 369 / 9e-122 Copper amine oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151900 [exp] 934 / 0 AT1G31690 793 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088800 [exp] 924 / 0 AT1G31710 782 / 0.0 Copper amine oxidase family protein (.1) Potri.010G089050 [exp] 815 / 0 AT1G31710 780 / 0.0 Copper amine oxidase family protein (.1) Potri.010G088900 [exp] 700 / 0 AT4G14940 904 / 0.0 amine oxidase 1 (.1) Potri.001G118300 [exp] 618 / 0 AT4G12290 1060 / 0.0 Copper amine oxidase family protein (.1) Potri.001G118200 [exp] 595 / 0 AT1G62810 961 / 0.0 Copper amine oxidase family protein (.1) Potri.012G084400 [exp] 284 / 3e-85 AT2G42490 1250 / 0.0 Copper amine oxidase family protein (.1) Potri.015G082900 [exp] 276 / 3e-82 AT2G42490 1256 / 0.0 Copper amine oxidase family protein (.1) Potri.010G045600 [exp] 269 / 1e-79 AT2G42490 1202 / 0.0 Copper amine oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01179 [flax] [poplar] Cu_amine_oxid Copper amine oxidase, enzyme domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02728 [flax] [poplar] Cu_amine_oxidN3 Copper amine oxidase, N3 domain CL0047 [flax] [poplar] CuAO_N2_N3 PF02727 [flax] [poplar] Cu_amine_oxidN2 Copper amine oxidase, N2 domain
Representative CDS sequence Show only first row Show all	>Lus10004912 pacid=23177759 polypeptide=Lus10004912 locus=Lus10004912.g ID=Lus10004912.BGIv1.0 annot-version=v1.0 ATGCCAATATACAAAGCTCCGCTCCACTCACAGTTACTACTTCCCTTCTTCTTCCTCTTCTTCCCCTCCACAATACCCATTTCCCTTTCAACTCACCCAC TCGACCCATTAACTCCGGCCGAGTTCTCCGCCGCCGCAACCACCATCCGCAAATCCTATTCAAACAGCACCTCCGTCGCTTTCCACCACATCGGCCTCAA AGAACCCCACAAGCCCGACGTCCTTGCCTACCTAAACCGCCGCCACCGCCACAACTTCACTGCCGCCGCCCCTCCGCCGCGTTGGGCCTTTGCCATCATC CGAGTAAACGGCACAACCACCCACGAGATCACCGTCGACCTTAACCATTCCAAACTGATTTCCGACCGAGTCTACGCAGGCTACGGCTACCCTATCTTCA CCGGCGAAGAGCAAGTGACTGCGGGGAAGCTGCCCTTCCAATACGCACCTTTTCTGGAGTCCTTGCGGAAGAGAGGGCTCAGCCTCAACTTGAATGAAAC CCTATGCCAGGTTTATGGGATTGGGTGGTTCGGAGAGAAGGAGAAGGGGAGAAGGATTGTGAAAGTTATGTGCAACTCCTTGGATGGGTCTGTCAATCTG TATGTGCGGCCGATTGAAGGGATCACTGTTACAATGGATCTCGATCGGATGAAGATAATTGGTTACAGAGATCGATCGATAATCCCTGTTCCCAAAGCGG ATGGCACTGATTACAGAGGATCGCAGCAGAGACCGCCTTTTGGGCCGGGCGTTAATCGGGTCAATGTTGTTCAACCCAATGGCCCAAGCTTCCGCATCGA TGGCCATAGAATCAGGTGGGCCAACTGGGATTTCCACCTGGGCTTCGACATGCGGGCCGGACCCATCGTTTCGTTGGCATCGATCTTCGACGTCGAGAAG CAGAAGTTCCGTCGAGTCTTGTACAGAGGGTTCGTCTCGGAACTGTTCGTGCCGTACATGGACTTAACGGAGGAATGGTACTACAGAACTTACTTCGACG CCGGCGAGTACGGGTACGGACTATGCGCCGCCTCGCTGTTACCTGGCGCTGACTGCCCTGAGAACGCTGTTTTCATGGACGCTTACGTTCCTGACCAGGA CGGGGTCGCCCTCCAAATCCCCAAAGCTTTCTGCATCTTCGAGAAGTACGCCGGCGACGTATTGTGGCGCCACACCGAGGCCGCTGTTTCCGACGAAGTG ACAGAGGTGAGGCCGGAGGTGAGTTTGGTGGTGAGAATGGTTTCCACCGTGGGCAATTATGACTACATTAATGACTGGGAATTCAAGCAGACCGGCTCCA TTAAAGTCACGGTTGGATTGACAGGTTTGCTAGAGGTTAGAGGAACTGAGTACACACACAAGGACCAAATCCAGGAAGAATCCTACGGCACATTATTGGC AGAGAACGCGATCGGCTCACACCACGACCATTTCCTAACATACCATCTGGACCTGGACGTAGACGGAGAAGACAACTCTTTTCTCAAATCCAAATTACAA CCCACCAGAGTTCCCAATCACACCTCGCCCAGGAAGAGCTACTGGACAGTGGTGAGCGAGACCGCCAAGACAGAGTCCAAAGCCAAAATCAGGCTCGGAT CAGAGCCGGTCGACCTATCGTTCATCAATCCTAACAAGAAGACCAAGATGGGGAACACCGTCGGATATCGTGTGGTCTCTGGTTCGGCGGCGGGACCTTT GCTGTCTGACGACGATTACGCGCAGATGAGGGGAGCGTTCACCAAGTACAATGTGTGGGTGACACCGTATAATGAGAGTGAGAAATGGGCGGCAGGGGTT TACGTTGACCAGAGCCATGGGGATGATACTTTGGCGACTTGGAGTGGCAGGGATAGGGAGATTGAGAACAAGGATATTGTGTTGTGGTATACGTTGGGAT TTCATCATGTCCCCTGTCAAGAAGATTTTCCGATCATGCCGACTTTGAGCACTGGGTTTGAGCTCCGGCCGAATAACTTCTTTGATAGGAATCCAGTTCT TAAGGCATTTATTAGCTGA
AA sequence Show only first row Show all	>Lus10004912 pacid=23177759 polypeptide=Lus10004912 locus=Lus10004912.g ID=Lus10004912.BGIv1.0 annot-version=v1.0 MPIYKAPLHSQLLLPFFFLFFPSTIPISLSTHPLDPLTPAEFSAAATTIRKSYSNSTSVAFHHIGLKEPHKPDVLAYLNRRHRHNFTAAAPPPRWAFAII RVNGTTTHEITVDLNHSKLISDRVYAGYGYPIFTGEEQVTAGKLPFQYAPFLESLRKRGLSLNLNETLCQVYGIGWFGEKEKGRRIVKVMCNSLDGSVNL YVRPIEGITVTMDLDRMKIIGYRDRSIIPVPKADGTDYRGSQQRPPFGPGVNRVNVVQPNGPSFRIDGHRIRWANWDFHLGFDMRAGPIVSLASIFDVEK QKFRRVLYRGFVSELFVPYMDLTEEWYYRTYFDAGEYGYGLCAASLLPGADCPENAVFMDAYVPDQDGVALQIPKAFCIFEKYAGDVLWRHTEAAVSDEV TEVRPEVSLVVRMVSTVGNYDYINDWEFKQTGSIKVTVGLTGLLEVRGTEYTHKDQIQEESYGTLLAENAIGSHHDHFLTYHLDLDVDGEDNSFLKSKLQ PTRVPNHTSPRKSYWTVVSETAKTESKAKIRLGSEPVDLSFINPNKKTKMGNTVGYRVVSGSAAGPLLSDDDYAQMRGAFTKYNVWVTPYNESEKWAAGV YVDQSHGDDTLATWSGRDREIENKDIVLWYTLGFHHVPCQEDFPIMPTLSTGFELRPNNFFDRNPVLKAFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31710			Copper amine oxidase family pr...		Lus10004912 [exp]	0	1
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	2.6	0.8334
AT2G26520			unknown protein		Lus10032762 [exp]	11.6	0.8089
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	16.4	0.7951
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10022406 [exp]	21.2	0.7751
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10043243 [exp]	22.2	0.7876
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	23.2	0.7705
AT3G27520			unknown protein		Lus10003664 [exp]	23.2	0.7270
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	25.1	0.7427
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	26.1	0.7414
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Lus10019474 [exp]	27.2	0.7766

Compare expression of checked genes

Lus10004912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.