Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19530 422 / 1e-148 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23820 139 / 1e-38 SPDS1 spermidine synthase 1 (.1.2) AT1G70310 133 / 4e-36 SPDS2 spermidine synthase 2 (.1) AT5G53120 103 / 5e-25 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010538 [exp] 632 / 0 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026457 [exp] 414 / 4e-145 AT5G19530 485 / 4e-173 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10000469 [exp] 375 / 1e-129 AT5G19530 407 / 2e-142 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10033437 [exp] 375 / 1e-129 AT5G19530 410 / 1e-143 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10030629 [exp] 126 / 1e-33 AT1G70310 531 / 0.0 spermidine synthase 2 (.1) Lus10029169 [exp] 125 / 6e-33 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2) Lus10030861 [exp] 124 / 2e-32 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2) Lus10039416 [exp] 114 / 4e-29 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2) Lus10012996 [exp] 112 / 4e-28 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089200 [exp] 535 / 0 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G151800 [exp] 532 / 0 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.006G222200 [exp] 423 / 5e-149 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G147200 [exp] 129 / 1e-34 AT1G70310 532 / 0.0 spermidine synthase 2 (.1) Potri.010G094600 [exp] 128 / 2e-34 AT1G70310 538 / 0.0 spermidine synthase 2 (.1) Potri.012G002600 [exp] 109 / 5e-27 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6) Potri.015G018900 [exp] 101 / 3e-24 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01564 [flax] [poplar] Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence Show only first row Show all	>Lus10004913 pacid=23177740 polypeptide=Lus10004913 locus=Lus10004913.g ID=Lus10004913.BGIv1.0 annot-version=v1.0 ATGGGTGAAATATCTTGCTCCGCTAATGGCCTCATGACCCATTCATCATCTAATAATTCATCCCCACCACCTAACGGCTACAGGAAGAGTTGCTGGTACG AGGAAGAGATTGAAGAGAACTTACGTTGGTCTTTTGCTCTCAATAGTATTTTGCATACAGGATCGACGCAGTACCAGGAGATTGCATTGTTCGACACAAA GCCGTTTGGGAAGGCGCTGGTTATCGATGGGAAGCTGCAGAGTGCTGAGGTGGATGAGTTCATCTACCATGAATCCCTTGTCCATCCCCCACTCCTTAAT CATCTCAACCCAAGGAGTGTGTTCATAATGGGAGGAGGTGAAGGCTCAACAGCCAGAGAAATCCTCAGGCACACAACAGTTGATAAGGTTGTTATGTGCG ACATTGACGAGGAAGTTGTTGAGTTCTGCAAGACTTACTTGGTTGTCAACACTGAAGCATTTGAGGATCCCAGATTGGAGGTTGTAATTAATGATGCCAG GGCTGAGCTAGAGAACAGAGAAGAAAGGTATGATGTGATCGTTGGAGACTTGGCTGACCCTATTGAAGACGGGCCTTGCTACAAACTATACACCAAGTCT TTTTATGGGTCCACTGTCAAGCCCAAGCTCAACCAGGGTGGCGTTTTCGTCACTCAGGCGGGTCCGGCAGGAATTTTCAGCCACACAGAAGTCTTCACTT GTATCTACAACACTTTGAGACAGGTTTTCAAATATGTCGTTCCATATGGTGCTCACATTCCGTCATATGCTGATACTTGGGGATGGGTTATGGCTTCGGA TAGCCCATTGGGGCTAAGTTGCGAAGAGATGGACCAGAGGATGAAACAGAGAGTGAAAGGAGAGAATAAGTTTCTCGATGGCATCACCTTCTCCTCTGCA TCCAACTTGAACAAAGCTGTCCGCAAATCGCTGGATAGCGAAACTCATGTTTACACAGAAGGGACAGCGAGGTTTATATACGGGCATGGCAAGAAAGACC ACCGATGA
AA sequence Show only first row Show all	>Lus10004913 pacid=23177740 polypeptide=Lus10004913 locus=Lus10004913.g ID=Lus10004913.BGIv1.0 annot-version=v1.0 MGEISCSANGLMTHSSSNNSSPPPNGYRKSCWYEEEIEENLRWSFALNSILHTGSTQYQEIALFDTKPFGKALVIDGKLQSAEVDEFIYHESLVHPPLLN HLNPRSVFIMGGGEGSTAREILRHTTVDKVVMCDIDEEVVEFCKTYLVVNTEAFEDPRLEVVINDARAELENREERYDVIVGDLADPIEDGPCYKLYTKS FYGSTVKPKLNQGGVFVTQAGPAGIFSHTEVFTCIYNTLRQVFKYVVPYGAHIPSYADTWGWVMASDSPLGLSCEEMDQRMKQRVKGENKFLDGITFSSA SNLNKAVRKSLDSETHVYTEGTARFIYGHGKKDHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10004913 [exp]	0	1
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Lus10010538 [exp]	1.0	0.8064
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	8.1	0.7618
AT1G10750			Protein of Unknown Function (D...		Lus10029116 [exp]	10.5	0.6939
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	21.4	0.7315
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	23.6	0.6952
					Lus10002962 [exp]	28.1	0.6618
AT1G19090		CRK1, RKF2	CYSTEINE-RICH RLK \(RECEPTOR-L...		Lus10020927 [exp]	31.7	0.6764
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	32.3	0.7029
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10003217 [exp]	39.2	0.6948
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	51.4	0.6380

Compare expression of checked genes

Lus10004913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.