Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32150 314 / 2e-108 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G62040 244 / 5e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G02230 221 / 1e-71 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59480 207 / 3e-66 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT5G59490 205 / 1e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010537 [exp] 467 / 1e-168 AT2G32150 338 / 7e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009256 [exp] 221 / 4e-72 AT3G62040 364 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10038016 [exp] 223 / 5e-72 AT3G62040 363 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10024382 [exp] 218 / 8e-70 AT5G02230 394 / 5e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10010848 [exp] 217 / 1e-69 AT5G02230 394 / 7e-139 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10004971 [exp] 214 / 8e-69 AT5G59480 392 / 1e-138 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10016518 [exp] 210 / 3e-67 AT5G59480 383 / 5e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10040786 [exp] 209 / 2e-66 AT5G59480 382 / 4e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10028107 [exp] 206 / 1e-65 AT5G02230 369 / 4e-129 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151700 [exp] 409 / 9e-146 AT2G32150 319 / 2e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G089300 [exp] 404 / 5e-144 AT2G32150 317 / 9e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G110800 [exp] 235 / 5e-77 AT3G62040 356 / 8e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G185300 [exp] 231 / 4e-75 AT3G62040 360 / 5e-126 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G086900 [exp] 226 / 2e-73 AT5G02230 402 / 4e-142 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.001G242300 [exp] 224 / 7e-73 AT5G59480 409 / 2e-145 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.009G033500 [exp] 216 / 2e-68 AT5G59480 361 / 4e-125 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10004914 pacid=23177735 polypeptide=Lus10004914 locus=Lus10004914.g ID=Lus10004914.BGIv1.0 annot-version=v1.0 ATGGATTCCTGCAGCAAAACTACTTGCGACTCCTTTTCCCCTTTCGACTGCCTTCTCTTTGATTTAGACGATACGCTTTACTCTTCCAAGCTCGGAATAG CTGAAGCTCTCCGCAACAACATCGACGATTTTCTTGTTGAGAAATGTGGATTCCCTCAGAGCAAAGCTCCAACCCTCCGATCAGAGCTCTTCAAAACCTA CGGCAGCTCTCTCGCCGGCTTGCGCGCATTAGGTTACAACATCGATGCCGATGATTACCATAGTTTCGTGCACGGAAGATTGCCGTACCACCTGATCAAG CCGGACCCGCAGCTATCCAACCTCATCAGAACCATTCCTCAACGGAAACTCATATTCACTAACTCGGACAGAAACCACGCGATTGCGGTGCTGGAGAGGT TAGGATTGGAAGACTGTTTCGATCAGATCATCTGCTTTGAGACCATGAACCCTAACCTCCCCAATTCGACCCGACCCGATGAATTCCCCGTCCTCCTCAA GCCATCCATTGACGCCATGAAAATCGCCCTCCGTGCCGCCGATGTTGATCCCCGTCGCACGCTGTTTCTGGACGACAACTCCCGCAACGTGGCATCAGGG AAAGCACTGGGCCTCCGCACCGTTCTGGTTGGGAAGACGGTAAAGATCCCAGAAGCTGACTACGTCCTGGAGAAGATCCACAATCTTGCACAGGCTGTTC CGGAGATTTGGGTCACCGGCGATCAAAGGATCGGCCGCAGCAAGAGCGATATGGATTCCATTCTCTCCACCGCTGCAGCCACCGTGGGGGCCTAG
AA sequence Show only first row Show all	>Lus10004914 pacid=23177735 polypeptide=Lus10004914 locus=Lus10004914.g ID=Lus10004914.BGIv1.0 annot-version=v1.0 MDSCSKTTCDSFSPFDCLLFDLDDTLYSSKLGIAEALRNNIDDFLVEKCGFPQSKAPTLRSELFKTYGSSLAGLRALGYNIDADDYHSFVHGRLPYHLIK PDPQLSNLIRTIPQRKLIFTNSDRNHAIAVLERLGLEDCFDQIICFETMNPNLPNSTRPDEFPVLLKPSIDAMKIALRAADVDPRRTLFLDDNSRNVASG KALGLRTVLVGKTVKIPEADYVLEKIHNLAQAVPEIWVTGDQRIGRSKSDMDSILSTAAATVGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10004914 [exp]	0	1
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10028531 [exp]	4.2	0.9421
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10017995 [exp]	4.9	0.9496
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10005718 [exp]	6.5	0.9374
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	8.1	0.9568
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	10.0	0.9527
AT1G61670			Lung seven transmembrane recep...		Lus10025218 [exp]	11.8	0.8958
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10002246 [exp]	12.2	0.9522
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	14.7	0.9162
AT3G19990			unknown protein		Lus10010154 [exp]	16.6	0.9291
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	17.3	0.9331

Compare expression of checked genes

Lus10004914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.