Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22400 1266 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 1180 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT1G17420 729 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 717 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT3G45140 676 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 636 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015184 [exp] 1147 / 0 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10031505 [exp] 1142 / 0 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10001465 [exp] 1107 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10008202 [exp] 1029 / 0 AT1G55020 1100 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10025857 [exp] 802 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10008113 [exp] 742 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 739 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 738 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10002547 [exp] 665 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151500 [exp] 1427 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 1404 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.005G032400 [exp] 1263 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032700 [exp] 1255 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 1250 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022000 [exp] 1238 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 1209 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 1192 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.014G177200 [exp] 811 / 0 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G018200 [exp] 803 / 0 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10004915 pacid=23177769 polypeptide=Lus10004915 locus=Lus10004915.g ID=Lus10004915.BGIv1.0 annot-version=v1.0 ATGGGAAGCTGCTGCCTGCTCCCCAAAACCACTCCCAAAGGCGCAGCACCGGAATCCGACAAGAAGATCCACGCAACTCTAGTGTTGATGAGAAAGAACG TCTTGGATTTGAACGACGCCAAGGCTTCCTTTCTTGATCGAATTCACGAGCTTCTCGGCAAAGGCGTCTCTCTTCACCTCATTAGCTCCCTTCCAGACCC AGCGAATGGGCTGGGAGGGAAGATTGGGAAAGCAGCATTCTTGGAGAAATGGACTCAGAAGATCACACCTGTAACAGCTACAGATACTGCTTTCGCCATT ACCTTCGACTGGGAACACACCACTATGGGCGTTCCTGGCGCTTTCATTATTAGAAACCATCACCACAGTCAGTTTTACCTCAAGACGCTCACGTTGGAAC ACGTCCCTGGACATGGCCGCGTCCATTTCGTCTGCAACTCATGGGTTTATCCTGTGCATAGATACAAATATCACCGCGTTTTCTTCTCAAACAAGACCTA CCTACCATGTCAAACACCAGAGCCATTGCGAAAGTACAGAGAAGAAGAGCTTGTCAATCTCCGAGGTGACGGGAAAGGGGAGCTCAAGGAGTGGGATAGA GTTTATGACTATGCTTACTACAATGATTTGGGAAGTCCTGATAAGGGGGAAGCATATGCACGCCCAGTTATTGGTGGATCCAAGGACTATCCATATCCCA GAAGAGGAAGAACAGGCCGAAAGCCAACCAATAAAGATCCCAATTCAGAGAGCAGATTGCCTCTTCTGAGCCTAGATATCTATGTGCCAAGGGATGAACG GTTTGGACATGTGAAGTTCTCAGACTTTCTGGCATATGGTCTTAAGTCCATCGTCCAAGTACTTGTCCCGGAGATATACTCTTTATTTGACAAGACAATC AATGAGTTTGACTCTTTCGAGGATGTTTTCAACCTCTACGAAGGGGGCATCAAATTGCCAAGTAAAGCCAAGATCAGCAAGATAAGAAATAACATACCAT GGGAACTGCTGAAAGAACTTGTTCGCAACGATGGTGAGAGATTTCTCAAGTTCCCTACGCCTGATGTAATCAAAGAGGATAAGTCTGCTTGGAGGACTGA TGAAGAGTTTGCTCGAGAGATGCTCGCTGGAGTCAATCCTGTCATCATCAGTCGCCTGAGAGAGTTTCCACCAGCCAGCCAGCTAGACCCTAAAGAATAC GGAAACCAGCATAGTACTATAAAGAAGGAGGAGATAGAGCTTAATATGGATGGTCTCACTGTTGATGAAGCAATTGCAAGAAATAGACTGTTTATATTGG ATCATCATGATGCATTGATGCTATACTTGAGGAAAATAAACTCAACCACTACAAAGACGTATGCCACCAGAACAATTCTCTTTCTTCAAGATGATGGAAC ACTGAAGCCATTGGCTATTGAACTAAGCCTCCCTCATCCACAGGGGAATCGCCACGGTGGGGTCAGCAAGGTATTCACTCCAGCAGAAGCTGGAGTTGAG GGCTCAATTTGGCAACTAGCTAAAGCCTATGTTGCAGTGAATGATTCCGGATACCACCAACTCATCAGTCACTGGTTGAACACTCATGCTGTGATAGAGC CTTTCGTAATTGCTACAAACAGGCAGCTGAGTGTTATCCACCCAATACACAAGCTTCTGCAACCACACTTCCGCGACACAATGAATATAAATGCATTTGC CAGACAGATCCTTATCAATGCTGGTGGTATACTAGAGATGACAGTCTTCCCAGCAAGATACGCCATGGAAATGTCAGCTGTTGTGTACAAAAACTGGATA TTCACTGAACAAGGACTCCCTGCCGACCTGATAAAGAGAGGAGTAGCAGTACCAGATCAAACCAAGCCACATGGGCTCAAACTTCTGATAGAGGACTACC CTTACGCCAACGATGGACTAGAAATTTGGTCAGCAATCGAAACATGGGTGCAGGAGTACTGCAGTTTCTACTACCCTACAGATGAGTTGATCCAGAACGA CGAGGAACTCCAATCCTGGTGGTCAGAATTGAGAAACGAAGGCCATGGAGATAAGAAAGACGAACCATGGTGGCCAGAGATGCAAAATTTCCAAGACCTC ACACAATCATGCACCATCATCATATGGGTAGCTTCAGCGCTCCACGCAGCAGTGAATTTCGGGCAATACCCTTACGCTGGATACCTCCCAAACCGTCCCA CCATCAGCCGGCGTTTCATGCCGGAGCTAGGTACTCCTGAATATGTGGAATTAGAGAAAGATCCGGACTTGGCCTACCTGAAAACAATCACAGCGCAGCT ACAAACTCTGCTAGGGATATCACTCATTGAATCGCTATCAAGGCATTCCACAGACGAGGTTTACCTTGGCCAGCGAGAAACAGTGGAGTGGACTACAGAC GATGAACCGCTAGCGGCGTTCAAACGATTTGGGGATAAGCTAGTCAAAATTGAGGGGAGAATCATGGAAATGAACAATAACCCTAGATTGAAGAACAGAG TTGGGCCGGTTAAGGTACCTTACACGTTGCTGTTTCCGAGTACATCGGATTACTCCAGAGAAGGAGGGCTCACTGGGAAGGGAATTCCGAACAGTGTCTC AATCTGA
AA sequence Show only first row Show all	>Lus10004915 pacid=23177769 polypeptide=Lus10004915 locus=Lus10004915.g ID=Lus10004915.BGIv1.0 annot-version=v1.0 MGSCCLLPKTTPKGAAPESDKKIHATLVLMRKNVLDLNDAKASFLDRIHELLGKGVSLHLISSLPDPANGLGGKIGKAAFLEKWTQKITPVTATDTAFAI TFDWEHTTMGVPGAFIIRNHHHSQFYLKTLTLEHVPGHGRVHFVCNSWVYPVHRYKYHRVFFSNKTYLPCQTPEPLRKYREEELVNLRGDGKGELKEWDR VYDYAYYNDLGSPDKGEAYARPVIGGSKDYPYPRRGRTGRKPTNKDPNSESRLPLLSLDIYVPRDERFGHVKFSDFLAYGLKSIVQVLVPEIYSLFDKTI NEFDSFEDVFNLYEGGIKLPSKAKISKIRNNIPWELLKELVRNDGERFLKFPTPDVIKEDKSAWRTDEEFAREMLAGVNPVIISRLREFPPASQLDPKEY GNQHSTIKKEEIELNMDGLTVDEAIARNRLFILDHHDALMLYLRKINSTTTKTYATRTILFLQDDGTLKPLAIELSLPHPQGNRHGGVSKVFTPAEAGVE GSIWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVIHPIHKLLQPHFRDTMNINAFARQILINAGGILEMTVFPARYAMEMSAVVYKNWI FTEQGLPADLIKRGVAVPDQTKPHGLKLLIEDYPYANDGLEIWSAIETWVQEYCSFYYPTDELIQNDEELQSWWSELRNEGHGDKKDEPWWPEMQNFQDL TQSCTIIIWVASALHAAVNFGQYPYAGYLPNRPTISRRFMPELGTPEYVELEKDPDLAYLKTITAQLQTLLGISLIESLSRHSTDEVYLGQRETVEWTTD DEPLAAFKRFGDKLVKIEGRIMEMNNNPRLKNRVGPVKVPYTLLFPSTSDYSREGGLTGKGIPNSVSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10004915 [exp]	0	1
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	4.6	0.7855
AT3G30841			Cofactor-independent phosphogl...		Lus10003060 [exp]	8.8	0.7703
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10023696 [exp]	10.8	0.7968
AT2G26920			Ubiquitin-associated/translati...		Lus10041640 [exp]	11.2	0.7739
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	12.8	0.8051
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	20.2	0.7820
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	21.9	0.7582
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10005934 [exp]	22.6	0.7583
AT5G13740		ZIF1	zinc induced facilitator 1 (.1...		Lus10035765 [exp]	23.7	0.7264
AT2G16050			Cysteine/Histidine-rich C1 dom...		Lus10017477 [exp]	25.0	0.7605

Compare expression of checked genes

Lus10004915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.