Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14950 577 / 0 KMS1 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) AT1G05360 542 / 0 KMS2 Killing Me Slowly 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010536 [exp] 753 / 0 AT4G14950 589 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G151300 [exp] 630 / 0 AT4G14950 610 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) Potri.010G089600 [exp] 619 / 0 AT4G14950 617 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) Potri.013G021700 [exp] 528 / 0 AT4G14950 545 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3) Potri.005G032200 [exp] 519 / 0 AT4G14950 543 / 0.0 Killing Me Slowly 1, SNARE associated Golgi protein family (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004916 pacid=23177765 polypeptide=Lus10004916 locus=Lus10004916.g ID=Lus10004916.BGIv1.0 annot-version=v1.0 ATGTCGATCCGATCCGAGGAAAACAAGAGTGCGCAGCGAGGGACATCCTCCCGAGTCTTGCCACAGATCTCCACCGTGCAACCCTTCCTCACTGGTTCAC CTTCGCCTTCGCCAAGAGATTTGAACTTCAGGGAACTTCGTGAAAAGCATCAACAGGAGCTGGACAGTTTGACACTAGCAACACAACCTCTCAAGACGTT GAAGTTCTTTGTTTTGGCTATATTTCAATATTTGAAGCTCTTTGTATTTTACCTTCTATCAAAAGGTGGTTGGCTGATGCTTCTGAGTGCCGTGGTGGTG CCTTTTGTTTTTCTGGTAGCTACTGTCGATGGTCCTCATGAAAAGCACCTTGAAGAAATATCTCACTATTTGCGATTTGGATTGTGGTGGATCACTCTTG GTGTTGCATCGTCAATTGGTCTCGGATCTGGTTTGCATACTTTTGTTCTTTATCTCGGTCCTCATATTGCCTTATTCACAATAAAAGCAATGCAATGTGG CCGCGTTGATTTAAAGAGCGCCCCGTATGATACCATACAGCTAGATAGAGGTCCTTCGTGGCTTGACAAAGATTGTCATGAGTTTGGGGATCCAATATTT CAGTCATACCATTTGTTGCGGGTGCCACTTAGCAGTATATTGCCACATGTACAGATAGAAGCCGTCTTGTGGGGGCTTGGAACTGCTCTAGGAGAGCTGC CTCCTTATTTCATCTCAAGGGCTGCACGTTTATCGGGCAGCAACATTGATGCCATGGAAGAATTGGAAGTTACTTCTACTGAAGGCGATGGTGTCATTGC AACGCACCTGAAGTCGATTAAACGCTGGCTTATGTCACACGCACAGCATTTGAACTTCTTCACAATTTTAGCACTTGCTTCGGTACCAAACCCCCTATTT GACCTTGCTGGTATTATGTGTGGCCAATTTGGGATCCCATTTTGGAAGTTTTTCCTTTCGACAGTGATTGGCAAGGCAATCATTAAGACTCACATACAGA CGGTATTCATAATATGTGTTTGTAATAACCAACTCCTTAACTGGGTAGAGAATGAAATGATCTGGATGTTCAGTTTCATACCGGGCTTGGCGTCTATCCT CCCCAACGTGATAACTAAACTCCATGAAATGAGAGAAAAGTTTCTTGCACCAACTCCTGCTCTCCCCAGTACGAAGGTTAAAAAGTGGGATTTCTCGTTT GCCGCAATCTGGAACACTCTAGTATGGCTCATGCTACTCAATTTCCTGTGCAAGATAGTGAGCTCAATGGCCCGGACGTATCGGAGAAGGCAGCAGGAGA AGGAGGTTGCAGATTTGACGAAACAAGAATCAACACTAACACATTCAGATTAG
AA sequence Show only first row Show all	>Lus10004916 pacid=23177765 polypeptide=Lus10004916 locus=Lus10004916.g ID=Lus10004916.BGIv1.0 annot-version=v1.0 MSIRSEENKSAQRGTSSRVLPQISTVQPFLTGSPSPSPRDLNFRELREKHQQELDSLTLATQPLKTLKFFVLAIFQYLKLFVFYLLSKGGWLMLLSAVVV PFVFLVATVDGPHEKHLEEISHYLRFGLWWITLGVASSIGLGSGLHTFVLYLGPHIALFTIKAMQCGRVDLKSAPYDTIQLDRGPSWLDKDCHEFGDPIF QSYHLLRVPLSSILPHVQIEAVLWGLGTALGELPPYFISRAARLSGSNIDAMEELEVTSTEGDGVIATHLKSIKRWLMSHAQHLNFFTILALASVPNPLF DLAGIMCGQFGIPFWKFFLSTVIGKAIIKTHIQTVFIICVCNNQLLNWVENEMIWMFSFIPGLASILPNVITKLHEMREKFLAPTPALPSTKVKKWDFSF AAIWNTLVWLMLLNFLCKIVSSMARTYRRRQQEKEVADLTKQESTLTHSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Lus10004916 [exp]	0	1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	14.7	0.7089
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	16.6	0.7267
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10013502 [exp]	18.0	0.6917
AT2G34630		GPPS, GPS1	GERANYLPYROPHOSPHATE SYNTHASE,...		Lus10023287 [exp]	21.0	0.6457
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10000624 [exp]	33.3	0.7159
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	33.6	0.7245
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10025339 [exp]	37.3	0.6930
AT1G75590			SAUR-like auxin-responsive pro...		Lus10033161 [exp]	40.4	0.7066
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10019928 [exp]	46.3	0.6551
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	54.2	0.6970

Compare expression of checked genes

Lus10004916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.