Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39380 461 / 2e-155 ATEXO70H2 exocyst subunit exo70 family protein H2 (.1) AT5G59730 449 / 2e-150 ATEXO70H7 exocyst subunit exo70 family protein H7 (.1.2) AT3G55150 446 / 3e-149 ATEXO70H1 exocyst subunit exo70 family protein H1 (.1) AT2G28640 436 / 6e-146 ATEXO70H5 exocyst subunit exo70 family protein H5 (.1) AT3G09520 433 / 2e-144 ATEXO70H4 exocyst subunit exo70 family protein H4 (.1) AT1G07725 414 / 3e-137 ATEXO70H6 exocyst subunit exo70 family protein H6 (.1) AT3G09530 406 / 6e-134 ATEXO70H3 exocyst subunit exo70 family protein H3 (.1) AT2G28650 339 / 7e-109 ATEXO70H8 exocyst subunit exo70 family protein H8 (.1) AT1G72470 314 / 2e-98 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 300 / 3e-93 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040872 [exp] 983 / 0 AT5G59730 533 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10005436 [exp] 736 / 0 AT5G59730 535 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Lus10015221 [exp] 735 / 0 AT2G39380 533 / 0.0 exocyst subunit exo70 family protein H2 (.1) Lus10025291 [exp] 458 / 7e-154 AT3G09520 636 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10024438 [exp] 456 / 6e-153 AT3G09520 634 / 0.0 exocyst subunit exo70 family protein H4 (.1) Lus10040329 [exp] 442 / 8e-148 AT3G55150 488 / 1e-165 exocyst subunit exo70 family protein H1 (.1) Lus10023450 [exp] 406 / 1e-134 AT3G55150 445 / 8e-150 exocyst subunit exo70 family protein H1 (.1) Lus10023452 [exp] 382 / 6e-125 AT3G55150 458 / 2e-154 exocyst subunit exo70 family protein H1 (.1) Lus10040331 [exp] 377 / 1e-122 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234600 [exp] 638 / 0 AT2G39380 540 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.009G026900 [exp] 616 / 0 AT5G59730 551 / 0.0 exocyst subunit exo70 family protein H7 (.1.2) Potri.006G214300 [exp] 516 / 5e-177 AT3G09520 622 / 0.0 exocyst subunit exo70 family protein H4 (.1) Potri.010G212400 [exp] 471 / 5e-159 AT2G39380 644 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.008G048700 [exp] 460 / 6e-155 AT2G39380 632 / 0.0 exocyst subunit exo70 family protein H2 (.1) Potri.001G166400 [exp] 315 / 8e-99 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.003G068700 [exp] 310 / 6e-97 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.015G094800 [exp] 288 / 2e-88 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.012G097100 [exp] 287 / 8e-88 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.013G152900 [exp] 272 / 1e-82 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10004917 pacid=23177746 polypeptide=Lus10004917 locus=Lus10004917.g ID=Lus10004917.BGIv1.0 annot-version=v1.0 ATGAGGTCAAATTTCTTCAAATCCCCGTCGCCGTCACCCCACCACTCTCCGGCAGCATCTCCGCCGCCTCGCCACACCTTCTCCGAGACACTCATAGAGG AGGACATCGAAAACGCTCACTCAATCATCTCCAAACACGAGTACTCCTCCGACAATTCGGCTTCCTCCTCCTCCTCATCAACTTCTCTCTTCTCCGACGA CCGAATCGAAGCCAAGAAGTACCTCTCCGCCGTGAAGGAGCTCCAGTCCGCTATGCAGTACTACGTCGCTAGCTATCCGGCCTCCGAAAACCTCGTCCGA GCTCAGAACCTGATGCAGAAGGCCATGAAGAAGCTCGAGCGGGAGTTCTATTTGATTCTCAGATCTAGCCGCGATCGTCTCGATTCTGAGTTTGTCTCCT CCCGCGCCTTTGTTGTCAGTAGCAGAGCTAGGTCTTCGACAGTTTCTTTCGGATCGGATGATGAATCATCCGATGCGGAGGGAGAAGAGATTCCGGAGGG GGAGCGTGCTTCTATTGCTGCAATTGCGGATCTGAAGGCGATTGCTGATTGTATGATTGCTGCCGGATATACCAAGGAGTGTATCCAGATTTACAACATT GTCCGGAAATCGGTGGTCGACGAAGAACTGTACCGACTAGGAATAGACAGATTCAGCTCGTCTCACCTCCACAAGCTCGATTGGGAAGCTATGGAGTCGA AAATCAAGACGTGGCTGTACGCGGTGAAGGCCGCCGTCAGGACTCTGTTCCGCGACGAGAGGCTGCTCTGCGACCAAGTTTTCTCGTCGTCCTCTATGGC GATTAGGGAAACCTGCTTTTTGGAGGTGGTTCGTGAAGGTGCAATGGACCTGTTTGGCTTCCCTGAAAATGTCTTCAAAAAGGGGAAGAAAATCACTCTG GAGAAAATGTTCCGCACTTTGGACATCTACGAAGCGATTTCAGATCTCTGGCCTGATATTGAATCGATTTTTTATTTTGAATCCACCGCTCCAGTTCGGA ATCTGGCTGTTAACTCTCTGGTCAAGCTCGGAGACGCGGTGAGAATGATGCTAACGGATCTGGAAACTTCGATTACGAAGGACAATTCGAAGACTTCAGT CCCCGGCGGCGGAGTACATCCTCTCACTCGTTATGTGATGAATTACATCTCCTTCCTCAGCGATTATACCGGAGCGCTCTCCGATATACTTGCTGATTGG CCGTTGGAGATGACGTCTATGCCGGAGACGTACTTCGCCAGCCCTGGCCCGGCAGACGACGTTAACGGCGTTACCTCTCCCGTTTCCGTCCGATTAGCTT GGCTGATTCTTGTCCTGCTCTGCAAACTTGACGGCAAGGTCCAATTCTACAACGATGTCCCACTCTCGTACTTGTTCTTAGCGAACAATCTCTGCTACAT AGTAAACAAGGTCCGTACATCGAGCATCAAATTCCACCTCGGCGACGAGTGGATCGACAAGCACGAAGCTAAAGTGAAGCAGTACGCTGCGAATTACGAG CGGCTCGGATGGGATAAAGTGATGTCGTCGCTGCCTTTCGACACCAACTCAACGGCGGCGACGATGACGGTTCAGGAAGCGGCGGATTGCTTCCGGAAAT TCAACTCTGCTTTCGAGGAGGCGTACAGGAAGCAGTCATCGTGGGTGGTGCCGGACTCGAGGCTGAGGGACGATATCAAAATCTCGGTGGCAAGGAAAAT CGGCCCGTTGTACCGGAGATTCTACGAGAGGTATAGGACGGCGGTGGCGAGGGAGTTGGGTGGAGTTGTAAGATATGCCCCTGACGATTTGGATAATCAT TGGTCGGATTTGTTTTATGGCAAGGTGGGAGGTGAGAGTGTTTCTACGAGTTATTCTTCTTCGGCCCGGTCGTCGGTTTCTTCCGGATCGAATCACTAG
AA sequence Show only first row Show all	>Lus10004917 pacid=23177746 polypeptide=Lus10004917 locus=Lus10004917.g ID=Lus10004917.BGIv1.0 annot-version=v1.0 MRSNFFKSPSPSPHHSPAASPPPRHTFSETLIEEDIENAHSIISKHEYSSDNSASSSSSSTSLFSDDRIEAKKYLSAVKELQSAMQYYVASYPASENLVR AQNLMQKAMKKLEREFYLILRSSRDRLDSEFVSSRAFVVSSRARSSTVSFGSDDESSDAEGEEIPEGERASIAAIADLKAIADCMIAAGYTKECIQIYNI VRKSVVDEELYRLGIDRFSSSHLHKLDWEAMESKIKTWLYAVKAAVRTLFRDERLLCDQVFSSSSMAIRETCFLEVVREGAMDLFGFPENVFKKGKKITL EKMFRTLDIYEAISDLWPDIESIFYFESTAPVRNLAVNSLVKLGDAVRMMLTDLETSITKDNSKTSVPGGGVHPLTRYVMNYISFLSDYTGALSDILADW PLEMTSMPETYFASPGPADDVNGVTSPVSVRLAWLILVLLCKLDGKVQFYNDVPLSYLFLANNLCYIVNKVRTSSIKFHLGDEWIDKHEAKVKQYAANYE RLGWDKVMSSLPFDTNSTAATMTVQEAADCFRKFNSAFEEAYRKQSSWVVPDSRLRDDIKISVARKIGPLYRRFYERYRTAVARELGGVVRYAPDDLDNH WSDLFYGKVGGESVSTSYSSSARSSVSSGSNH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10004917 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10032976 [exp]	4.9	0.8392
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	10.2	0.8451
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	11.4	0.8429
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10037286 [exp]	11.8	0.7900
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	14.3	0.7936
AT3G57120			Protein kinase superfamily pro...		Lus10011517 [exp]	18.3	0.8029
AT4G08250	GRAS		GRAS family transcription fact...		Lus10022664 [exp]	19.5	0.7755
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	21.9	0.7627
AT1G23850			unknown protein		Lus10030860 [exp]	23.8	0.8239
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042242 [exp]	24.6	0.8202

Compare expression of checked genes

Lus10004917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.