Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28630 541 / 0 KCS12 3-ketoacyl-CoA synthase 12 (.1) AT1G07720 526 / 0 KCS3 3-ketoacyl-CoA synthase 3 (.1) AT5G04530 421 / 4e-145 KCS19 3-ketoacyl-CoA synthase 19 (.1) AT1G01120 306 / 1e-99 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G46720 290 / 8e-94 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT4G34510 289 / 2e-93 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT2G16280 288 / 2e-92 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G25450 277 / 8e-89 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1) AT2G26640 278 / 1e-88 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 274 / 5e-87 KCS2 3-ketoacyl-CoA synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040873 [exp] 590 / 0 AT2G28630 546 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10005434 [exp] 590 / 0 AT2G28630 664 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10015222 [exp] 587 / 0 AT2G28630 654 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Lus10023458 [exp] 423 / 8e-146 AT5G04530 605 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10040333 [exp] 422 / 3e-145 AT5G04530 611 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Lus10002191 [exp] 373 / 2e-126 AT5G04530 495 / 1e-173 3-ketoacyl-CoA synthase 19 (.1) Lus10039906 [exp] 372 / 2e-124 AT5G04530 497 / 1e-172 3-ketoacyl-CoA synthase 19 (.1) Lus10033626 [exp] 351 / 2e-117 AT5G04530 467 / 4e-162 3-ketoacyl-CoA synthase 19 (.1) Lus10033625 [exp] 350 / 5e-114 AT5G04530 461 / 9e-156 3-ketoacyl-CoA synthase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G026800 [exp] 576 / 0 AT2G28630 660 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.001G234500 [exp] 549 / 0 AT2G28630 647 / 0.0 3-ketoacyl-CoA synthase 12 (.1) Potri.010G212600 [exp] 427 / 8e-148 AT5G04530 576 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119600 [exp] 414 / 2e-142 AT5G04530 561 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G119800 [exp] 397 / 7e-136 AT5G04530 558 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.013G120100 [exp] 391 / 9e-134 AT5G04530 543 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.019G091600 [exp] 337 / 6e-113 AT5G04530 520 / 0.0 3-ketoacyl-CoA synthase 19 (.1) Potri.008G048500 [exp] 310 / 2e-103 AT5G04530 337 / 2e-113 3-ketoacyl-CoA synthase 19 (.1) Potri.002G178000 [exp] 301 / 1e-97 AT1G01120 826 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.014G104300 [exp] 290 / 2e-93 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02797 [flax] [poplar] Chal_sti_synt_C Chalcone and stilbene synthases, C-terminal domain CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein
Representative CDS sequence Show only first row Show all	>Lus10004918 pacid=23177770 polypeptide=Lus10004918 locus=Lus10004918.g ID=Lus10004918.BGIv1.0 annot-version=v1.0 ATGGACGCCATTGTTAGTACCCTACTCAAATCCTTCCTAATCCTCTCCCCTCTCCTCCTCGTTCTATGGAAATGGCTCGACAACAAGCGCCACCAAAACT GCTACATCCTCGACTACGAGCTCTACAAGCCTACCGACGACCGCAAGCTCGACACCGAGTTCTGCGGCAACATCATCAAGCGGAACAAGAACTTAGGCCT CCTCGAGTACCAGTTCCTGTTAAAAGCCATCGTCAGCTCAGGGATTGGTGAAGAAACCTACGCTCCTTCCATGGTGTTCCAAGGCCGGGAAGAGACTCCC ACTCTCCAGGACGGGATCGAAGAGATGGACGAGTTCTTCCACTCCACCATCGACAAGCTCCTGGAACGATCCGGAATCTCACCTCAGGAGATCGACCTTC TAGTTGTTAATATCTCGATGCTTGCTGCCGTTCCGTCGCTCAGCTCGAGGATTGTGAATCACTACAAGTTGCGGGAGGATGTCAAGACGTTTAATCTCAC TGGTATGGGGTGCAGCGCTAGCTTGATTTCGACTGGCATTGTGTCGAACACCTTCCGTGCGTACAAAAACAGAGTCGCCTTAGTCATCACTTCGGAATCT CTGTCTCCGAATTGGTACGCCGGGAACGACAAATCCATGATTTTGGCTAACTGTTTGTTCAGAACTGGCGGATGCGCGATTCTGTTGACGAACAAGCCGG AGCTGAAGAACCGTTCGATGTTCAAGCTCAAGACTCTGGTCAGGACTCACCATGGAAACAGAGACGAGTCGTTCGGTTGCTGCATCCAGAAGGAGGACGA ACAAGGCAGATTAGGTTTCCATTTGGGGAAAACTCTGCCGAAGGCAGCCACCAGGGCCTTCGTCGACAATTTGAAGGAGATTTCGCCGAAGATCCTTCCG GTGAGGGAGCTGATCAGGTTCTTGTTCGTCTACTCGATGAGGAAGTTAGCCAAACGCGTTCCCGGAGGAGGCGGCGGCGGCAAGCCACCGCCGCCGCCGG TGATTAATTTCAAGACCGGAGTGGATCATTTCTGCATACACACAGGAGGGAAAGCGGTGATCGACGGGATAGGATTGAACCTCGAGCTGAGCCAGTACGA TTTGGAGCCGGCGAGGATGACGTTGCACCGGTGGGGGAACACGTCGGCGAGCAGCTTGTGGTATGTGCTGGCGTACATGGCGGCAAAGCGGCGGGGGGGT GGGGGGGGGGGGGGTACATGGAGGCGAAGAAGAGGTTGA
AA sequence Show only first row Show all	>Lus10004918 pacid=23177770 polypeptide=Lus10004918 locus=Lus10004918.g ID=Lus10004918.BGIv1.0 annot-version=v1.0 MDAIVSTLLKSFLILSPLLLVLWKWLDNKRHQNCYILDYELYKPTDDRKLDTEFCGNIIKRNKNLGLLEYQFLLKAIVSSGIGEETYAPSMVFQGREETP TLQDGIEEMDEFFHSTIDKLLERSGISPQEIDLLVVNISMLAAVPSLSSRIVNHYKLREDVKTFNLTGMGCSASLISTGIVSNTFRAYKNRVALVITSES LSPNWYAGNDKSMILANCLFRTGGCAILLTNKPELKNRSMFKLKTLVRTHHGNRDESFGCCIQKEDEQGRLGFHLGKTLPKAATRAFVDNLKEISPKILP VRELIRFLFVYSMRKLAKRVPGGGGGGKPPPPPVINFKTGVDHFCIHTGGKAVIDGIGLNLELSQYDLEPARMTLHRWGNTSASSLWYVLAYMAAKRRGG GGGGGTWRRRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	0	1
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	1.0	0.9500
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	2.4	0.9162
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	2.8	0.8945
AT1G74160			unknown protein		Lus10021148 [exp]	5.5	0.8936
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024415 [exp]	6.5	0.8956
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	6.8	0.8402
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10008254 [exp]	7.5	0.8429
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10018122 [exp]	7.5	0.8778
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	9.2	0.8877
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	10.2	0.8875

Compare expression of checked genes

Lus10004918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.