Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46220 939 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040874 [exp] 1384 / 0 AT3G46220 980 / 0.0 unknown protein Lus10000152 [exp] 271 / 5e-87 AT3G46220 176 / 3e-52 unknown protein Lus10000127 [exp] 149 / 1e-41 AT3G46220 126 / 1e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G234300 [exp] 1057 / 0 AT3G46220 978 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09743 [flax] [poplar] E3_UFM1_ligase E3 UFM1-protein ligase 1
Representative CDS sequence Show only first row Show all	>Lus10004920 pacid=23177750 polypeptide=Lus10004920 locus=Lus10004920.g ID=Lus10004920.BGIv1.0 annot-version=v1.0 ATGGACGCAGAACTGCTTGAATTGCAGCCACAGTTGGAGTCTGCTCAGCAGGCGAAATCGAGTATTCGGCTATCTGAAAGCAACGTTGTGGAGCTGGTAC AGAAGCTACAGGAGCTTCACATTATCGACTTCGATCTTCTCCACACCGTCTCCGGGGAAGAGTACATCACAACTGATCAATTGCGGCGGGAAATTGTGGC GGAAGTGAAGAGATCGGGACGCGTTTCACTGATAGACCTTTCTGATGTTATCGGTGTTGATCTGTATCATGTTGAGAAGCAAGCTCAAAATGTTATTTCC GATGATCCTGAGTTCATGTTGCTTCAAGGAGAGATTATATCTCAAACCTACTGGGATAATGTTGCGGAGGAGATCAACGAGAGGCTTCAAGAATGCAGCC AAATTGCTTTGGCAGAAGTTGCTGCACAGTTAAATGTCGGAACAGAATTTGTGTCGTCTATGTTGGAGGCTCGCCTTGGAACTCTGGTAAATGGTAGGCT TGAAAGAGGACAGCTATACACGCCGGCTTATGTTACCAGAGTTAGTGCGATGGTCCGTGGTGCTGCAAGGGCTATTACTGTACCGACGAACTTGTCTCTA CTTTGGAGCAATTTACAGACGCTGCTGCATGAAATGGATGGAGCTAGTGGAGTTGCTATAGAGAGTTCATTCTTTCAGTCCATGTTTAATGCGCTATTGA AAGAAGGAGAGGTTCTAGGATCACTTCGTGCTGGAGTTCACTGGACACCAACTGTCTTTGCTAATGCTCAAAAGGAATGCGTAGATTCAATGCTTTCACA GAATTCTTATGTTAGCTATGACGCCTTGCAAAAACTTGGTATTACACAGGCTCTGCAGTTTTTACAGGTATCTGATAAGTTGCTTCAGTCCAGATATCCA GAGGGAATACCGTTGGTTGCAACATTTGTGCACCCATCCATGATTGAGATATTAGATACTGCTATTGAGGATGCTGTTGACCGTGGTAGTTGGATCGATT CTCTTTCTGTATTACCTTCATCATTTGGGTCCCAAGATGCATCCAAGATTCTGTCACTTTGTCCTTCTCTTCAGTCAGCTCTCAAGAATAACAAAGGACT CATCTTGGGCGATTCATTTGTGTTCAGCAACACTTTCCTCAAGGATCTCTATGATCCTGTTGAGAAGGAAGCAGAGAAGTTTGTTCTCTCGGGCACTTCT GGTGCGACGGTAACTGACGAGCCGGTGAAGGAAACTAAAGGTTCCGGCAGATCTACCGAGTTAAACGAAACTGTTAATGACAGGAAAAAGAAAAAGGGGA AATCTTCTGGATTAAAAGCAGAAGACAGCGTTACAGAAGATGATCATGTTCCAATAAAGGGAAAGAAAAACCAAAGGAAAGGAAAGGCTGCTGCATCAGG TCAAGTATCCGACACAAAAGCTGGATCTAAGAAAGATTCCGCTAAGGTGCAGGAGGGAAACGACGTCTACCCTTCAGAAGAATGGATTATTGAAAATATA CTGTCCTTGATTCCGGATTTTGAACAGCAAGGTATAGAGGATCCACAGACTATACTGAAACCAATAGCGAACCATATGAGACCTTTGCTGATAAACTTTT TGAAGGAGAGAAGAAAGACATTGCTTACAGAAAATGCCGAGCAGATGAAACGGGTGCTTAATAATTTGCAAAAGAAACTCGAAGAGCCTTTCTTATATAT ACAGCTGTATGAAAACGCTCTAGACTTATTTGACGACGACCAATCAACTTCAATGATTTTGCATAAGTACTTACTAAGAACAATGGGTACTCCAATGGCA GATCTTCTTCTGCATAACTTGGATGTGCACAACAAATTGAAGAACGGAATCTCAGTTGAAGAATCTTCAGAAGTTGGAACATTGACTTCTACAGAAAGGA CATCTATTCTTGTTGAAGGATTCACGAGTTCACTTCGGGACACCGCTGAGGAGAGTGGGTTATACTTGAAACAACTTGACAAGAAGTTGGAGAGAACGAT TCTCCATTCTTATCGCAAGGATTTGACAGCTCAAGTGTCTGCAGAAAGTGATCCAGTTGCACTTCTTCCTAAAGTTGTGTCCCTTCTTTATATTCAGATC CACAATAAAGCTCTCCAGGCTTCTGGACGTGCCATTTCTATTGCAGTTTCTCGATTGAAGGATAAATTGGATGGTCCAGCGTACAAGATTCTCACGGATT ACCAAACTGCAACCGTTAAACTCTTGGCTCTTTCATCTGCTGCAACTGGTGATGAAGAAGACTGTACATCGGATAGAATCTTGAGCAAAAGGGAGCTTCT TGAGAGCCTGATGCCTCAGTTGAAGGGCCTTGTTCTGAGTCCTTCATCCTCGCAGACACAATCCTAA
AA sequence Show only first row Show all	>Lus10004920 pacid=23177750 polypeptide=Lus10004920 locus=Lus10004920.g ID=Lus10004920.BGIv1.0 annot-version=v1.0 MDAELLELQPQLESAQQAKSSIRLSESNVVELVQKLQELHIIDFDLLHTVSGEEYITTDQLRREIVAEVKRSGRVSLIDLSDVIGVDLYHVEKQAQNVIS DDPEFMLLQGEIISQTYWDNVAEEINERLQECSQIALAEVAAQLNVGTEFVSSMLEARLGTLVNGRLERGQLYTPAYVTRVSAMVRGAARAITVPTNLSL LWSNLQTLLHEMDGASGVAIESSFFQSMFNALLKEGEVLGSLRAGVHWTPTVFANAQKECVDSMLSQNSYVSYDALQKLGITQALQFLQVSDKLLQSRYP EGIPLVATFVHPSMIEILDTAIEDAVDRGSWIDSLSVLPSSFGSQDASKILSLCPSLQSALKNNKGLILGDSFVFSNTFLKDLYDPVEKEAEKFVLSGTS GATVTDEPVKETKGSGRSTELNETVNDRKKKKGKSSGLKAEDSVTEDDHVPIKGKKNQRKGKAAASGQVSDTKAGSKKDSAKVQEGNDVYPSEEWIIENI LSLIPDFEQQGIEDPQTILKPIANHMRPLLINFLKERRKTLLTENAEQMKRVLNNLQKKLEEPFLYIQLYENALDLFDDDQSTSMILHKYLLRTMGTPMA DLLLHNLDVHNKLKNGISVEESSEVGTLTSTERTSILVEGFTSSLRDTAEESGLYLKQLDKKLERTILHSYRKDLTAQVSAESDPVALLPKVVSLLYIQI HNKALQASGRAISIAVSRLKDKLDGPAYKILTDYQTATVKLLALSSAATGDEEDCTSDRILSKRELLESLMPQLKGLVLSPSSSQTQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46220			unknown protein		Lus10004920 [exp]	0	1
AT5G58100			unknown protein		Lus10008552 [exp]	1.4	0.8549
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	1.7	0.8599
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	5.3	0.8369
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	5.9	0.8328
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	6.0	0.8455
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10007957 [exp]	6.9	0.8308
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	11.2	0.8268
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	15.0	0.8148
AT3G48860			unknown protein		Lus10043194 [exp]	15.6	0.8091
AT1G31430			Pentatricopeptide repeat (PPR-...		Lus10002288 [exp]	19.3	0.7634

Compare expression of checked genes

Lus10004920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.