Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07705 614 / 0 NOT2 / NOT3 / NOT5 family (.1.2) AT5G59710 605 / 0 ATVIP2, VIP2 VIRE2 interacting protein 2 (.1) AT5G18230 48 / 2e-05 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) AT1G07700 41 / 0.001 Thioredoxin superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040875 [exp] 810 / 0 AT1G07705 659 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Lus10020262 [exp] 44 / 0.0003 AT5G18230 977 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Lus10002632 [exp] 43 / 0.0008 AT5G18230 974 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349400 [exp] 771 / 0 AT1G07705 765 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Potri.017G065900 [exp] 742 / 0 AT1G07705 716 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Potri.013G059800 [exp] 47 / 4e-05 AT5G18230 829 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Potri.019G032800 [exp] 46 / 7e-05 AT5G18230 846 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04153 [flax] [poplar] NOT2_3_5 NOT2 / NOT3 / NOT5 family
Representative CDS sequence Show only first row Show all	>Lus10004921 pacid=23177747 polypeptide=Lus10004921 locus=Lus10004921.g ID=Lus10004921.BGIv1.0 annot-version=v1.0 ATGACCTGTTTTTGCATAATATTGATCTTCCTGGCTCCAGTTATGCTTTGGGATGATTCTTCTTTGAATGGTTCCGCCTCAAATCTTCCAGACAGCAGTG GAAGGTCTTTCACAACATCTTTCTCTGGCCAGTCTGGTGCACCATCTCCTGTGTTTCATCATAATGGATCTATTCAGGGGTTGCACAATATCCATGGGAG CTTTAATGTTCCAAACATGCCGGGTACTATGACATCAAGAAATTCTTCAATGAACAATGTTCCTTCTGGTGCAGTTCAACAACCCACTGGTAGCCTTTCT AGTGGACGGTTCACATCCAATAATCTTCCGGTGGCTCTATCTCAGTTATCTCACGGAGCTTCACATGGACATTCAGGAGTAACCAACAGAGGAGGTATAA GTATTGTAGGAAATCCTGGCTTTAGTAGTAACACAAATGGGATTAGTGGTTCTATTCCTGGTATTCTCCCCACCTATGCAGCAATTGGTAACCGGGATTC TGTTCCAGGATTGGGAGTGTCCCCAATTTTGGGAAATGCAGGTTCTCGGATTACAAGCTCCATGGGTAACATGGTTGGAGGGGGCAACATTGGGAGAAGC TTAAATTCGGGTGGAGGGTTATCAATGACCGGGCTTGCATCTCGTCTAAATCTGAATGCAAATAGTGGATCTGGAAGCCTAAGTGGACAGAATCGATTGA TGGGTGGTGTTCTTCCACAAGGAAATCCTCAAGTGATGTCTATGATAGGAAACTCCTATCCTAGTGGTGGTGGACCACTTTCTCAAAGCCATGTGCAAGG AGTGAACAGCCTTAGTTCTATGGGAATGTTGAATGATGTGAACTCCAATAACAGCTCTCCTTTTGACATAAACAATGATTTCCCTCAATTGACAAGTCGA CCCAACTCCGCAGGAGGACCTCAAGGGCAACTGGGTTCACTGCGTAAGCAAGGTCTTGGAGTAAGTCCCATTGTTCAGCAAAACCAAGAGTTCAGTATAC AAAACGAAGATTTCCCAGCTTTACCTGGATTTAAAGGGGGTAATGCTGACTATCCTATGGACATGCATCAGAAAGAGCAATTGCATGACAATACAATGTC AATGATGCAGTCTCAGCACTTCTCTATGGGGAGATCTTCAGGATTTAACTTAGGCGGTACATACCCTTCATATCGTCCACAGCAACAGCAGCAACATGCT CCAGCTGTCAGTAGTAGCGGCATCTCATTCTCGGGAGTCAACAATCAAGATCTTCTCCATGGTTCAGATATATTTCCATCCTCTCATTCGAACTACCAAT CACAGAACAATGGACCACCTGGGATGGGATTGAAACCTCTAAGTTCAGCGAATTCAGTATCTGGCATCGGATCGTACGATCAACTTATTCAGCAGTATCA GCAACACCAAGGGCAGCCGCAATTTAGACTGCAGCAAATGTCGGCTGTGAATCAGTCGTTTAGGGATCAAGGCATTAAACCCATGCAAGCACCATCGCCT ACTGAAGACTTTGGCTTACTTGGTTTGTTATGTGTCATACGGATGAACAATCCCGAGCTGACATCTCAGTTCACCGTGGACACACTGTTCTACATATTCT ACAGCATGCCGAAAGATGAAGCTCAGTTATATGCTGCTAATGAACTGTATAACAGAGGGTGGATTTACCACAAAGAGCAACGAGTATGGCTAATAAGGGT ACAAAACGTGGAGCNNNNNNNNNNNNNNNNGCCGCTTGTTAAGACGGCAACTTACGAGAGAGGCTCTTATCACTGCTTCGATCCAAACTCATTCGAAATA ATCCGCAAGGATACTTTCGTATTGTCGTACGAATTGGTGGAGAAGAGACCAGTTCTGCCTCAACATTAA
AA sequence Show only first row Show all	>Lus10004921 pacid=23177747 polypeptide=Lus10004921 locus=Lus10004921.g ID=Lus10004921.BGIv1.0 annot-version=v1.0 MTCFCIILIFLAPVMLWDDSSLNGSASNLPDSSGRSFTTSFSGQSGAPSPVFHHNGSIQGLHNIHGSFNVPNMPGTMTSRNSSMNNVPSGAVQQPTGSLS SGRFTSNNLPVALSQLSHGASHGHSGVTNRGGISIVGNPGFSSNTNGISGSIPGILPTYAAIGNRDSVPGLGVSPILGNAGSRITSSMGNMVGGGNIGRS LNSGGGLSMTGLASRLNLNANSGSGSLSGQNRLMGGVLPQGNPQVMSMIGNSYPSGGGPLSQSHVQGVNSLSSMGMLNDVNSNNSSPFDINNDFPQLTSR PNSAGGPQGQLGSLRKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNADYPMDMHQKEQLHDNTMSMMQSQHFSMGRSSGFNLGGTYPSYRPQQQQQHA PAVSSSGISFSGVNNQDLLHGSDIFPSSHSNYQSQNNGPPGMGLKPLSSANSVSGIGSYDQLIQQYQQHQGQPQFRLQQMSAVNQSFRDQGIKPMQAPSP TEDFGLLGLLCVIRMNNPELTSQFTVDTLFYIFYSMPKDEAQLYAANELYNRGWIYHKEQRVWLIRVQNVEXXXXXXPLVKTATYERGSYHCFDPNSFEI IRKDTFVLSYELVEKRPVLPQH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	0	1
AT1G30470			SIT4 phosphatase-associated fa...		Lus10023354 [exp]	4.0	0.8986
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10015838 [exp]	4.0	0.9002
AT3G50380			Protein of unknown function (D...		Lus10022476 [exp]	5.9	0.9122
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	6.2	0.8848
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Lus10008461 [exp]	6.3	0.8857
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	7.6	0.8679
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	13.6	0.8937
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	13.6	0.8880
AT5G50840			unknown protein		Lus10023501 [exp]	16.7	0.8440
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	16.8	0.8992

Compare expression of checked genes

Lus10004921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.